ClickHouse/contrib/jemalloc-cmake/CMakeLists.txt

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CMake
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if (SANITIZE OR NOT (
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((OS_LINUX OR OS_FREEBSD) AND (ARCH_AMD64 OR ARCH_AARCH64 OR ARCH_PPC64LE OR ARCH_RISCV64 OR ARCH_S390X)) OR
(OS_DARWIN AND (CMAKE_BUILD_TYPE_UC STREQUAL "RELWITHDEBINFO" OR CMAKE_BUILD_TYPE_UC STREQUAL "DEBUG"))
))
if (ENABLE_JEMALLOC)
message (${RECONFIGURE_MESSAGE_LEVEL}
"jemalloc is disabled implicitly: it doesn't work with sanitizers and can only be used with x86_64, aarch64, or ppc64le Linux or FreeBSD builds and RelWithDebInfo macOS builds. Use -DENABLE_JEMALLOC=0")
endif ()
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set (ENABLE_JEMALLOC OFF)
else ()
option (ENABLE_JEMALLOC "Enable jemalloc allocator" ${ENABLE_LIBRARIES})
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endif ()
if (NOT ENABLE_JEMALLOC)
message (STATUS "Not using jemalloc")
return()
endif ()
if (NOT OS_LINUX)
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message (WARNING "jemalloc support on non-Linux is EXPERIMENTAL")
endif()
if (OS_LINUX)
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# ThreadPool select job randomly, and there can be some threads that have been
# performed some memory-heavy tasks before and will be inactive for some time,
# but until it becomes active again, the memory will not be freed since, by
# default, each thread has its arena, but there should be no more than
# 4*CPU arenas (see opt.nareans description).
#
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# By enabling percpu_arena number of arenas is limited to the number of CPUs, and hence
# this problem should go away.
#
# muzzy_decay_ms -- use MADV_FREE when available on newer Linuxes, to
# avoid spurious latencies and additional work associated with
# MADV_DONTNEED. See
# https://github.com/ClickHouse/ClickHouse/issues/11121 for motivation.
set (JEMALLOC_CONFIG_MALLOC_CONF "percpu_arena:percpu,oversize_threshold:0,muzzy_decay_ms:0,dirty_decay_ms:5000,prof:true,prof_active:false,background_thread:true")
else()
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set (JEMALLOC_CONFIG_MALLOC_CONF "oversize_threshold:0,muzzy_decay_ms:0,dirty_decay_ms:5000")
endif()
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# CACHE variable is empty to allow changing defaults without the necessity
# to purge cache
set (JEMALLOC_CONFIG_MALLOC_CONF_OVERRIDE "" CACHE STRING "Change default configuration string of JEMalloc" )
if (JEMALLOC_CONFIG_MALLOC_CONF_OVERRIDE)
set (JEMALLOC_CONFIG_MALLOC_CONF "${JEMALLOC_CONFIG_MALLOC_CONF_OVERRIDE}")
endif()
message (STATUS "jemalloc malloc_conf: ${JEMALLOC_CONFIG_MALLOC_CONF}")
set (LIBRARY_DIR "${ClickHouse_SOURCE_DIR}/contrib/jemalloc")
set (SRCS
"${LIBRARY_DIR}/src/arena.c"
"${LIBRARY_DIR}/src/background_thread.c"
"${LIBRARY_DIR}/src/base.c"
"${LIBRARY_DIR}/src/bin.c"
"${LIBRARY_DIR}/src/bin_info.c"
"${LIBRARY_DIR}/src/bitmap.c"
"${LIBRARY_DIR}/src/buf_writer.c"
"${LIBRARY_DIR}/src/cache_bin.c"
"${LIBRARY_DIR}/src/ckh.c"
"${LIBRARY_DIR}/src/counter.c"
"${LIBRARY_DIR}/src/ctl.c"
"${LIBRARY_DIR}/src/decay.c"
"${LIBRARY_DIR}/src/div.c"
"${LIBRARY_DIR}/src/ecache.c"
"${LIBRARY_DIR}/src/edata.c"
"${LIBRARY_DIR}/src/edata_cache.c"
"${LIBRARY_DIR}/src/ehooks.c"
"${LIBRARY_DIR}/src/emap.c"
"${LIBRARY_DIR}/src/eset.c"
"${LIBRARY_DIR}/src/exp_grow.c"
"${LIBRARY_DIR}/src/extent.c"
"${LIBRARY_DIR}/src/extent_dss.c"
"${LIBRARY_DIR}/src/extent_mmap.c"
"${LIBRARY_DIR}/src/fxp.c"
"${LIBRARY_DIR}/src/hook.c"
"${LIBRARY_DIR}/src/hpa.c"
"${LIBRARY_DIR}/src/hpa_hooks.c"
"${LIBRARY_DIR}/src/hpdata.c"
"${LIBRARY_DIR}/src/inspect.c"
"${LIBRARY_DIR}/src/jemalloc.c"
"${LIBRARY_DIR}/src/large.c"
"${LIBRARY_DIR}/src/log.c"
"${LIBRARY_DIR}/src/malloc_io.c"
"${LIBRARY_DIR}/src/mutex.c"
"${LIBRARY_DIR}/src/nstime.c"
"${LIBRARY_DIR}/src/pa.c"
"${LIBRARY_DIR}/src/pac.c"
"${LIBRARY_DIR}/src/pa_extra.c"
"${LIBRARY_DIR}/src/pages.c"
"${LIBRARY_DIR}/src/pai.c"
"${LIBRARY_DIR}/src/peak_event.c"
"${LIBRARY_DIR}/src/prof.c"
"${LIBRARY_DIR}/src/prof_data.c"
"${LIBRARY_DIR}/src/prof_log.c"
"${LIBRARY_DIR}/src/prof_recent.c"
"${LIBRARY_DIR}/src/prof_stats.c"
"${LIBRARY_DIR}/src/prof_sys.c"
"${LIBRARY_DIR}/src/psset.c"
"${LIBRARY_DIR}/src/rtree.c"
"${LIBRARY_DIR}/src/safety_check.c"
"${LIBRARY_DIR}/src/san_bump.c"
"${LIBRARY_DIR}/src/san.c"
"${LIBRARY_DIR}/src/sc.c"
"${LIBRARY_DIR}/src/sec.c"
"${LIBRARY_DIR}/src/stats.c"
"${LIBRARY_DIR}/src/sz.c"
"${LIBRARY_DIR}/src/tcache.c"
"${LIBRARY_DIR}/src/test_hooks.c"
"${LIBRARY_DIR}/src/thread_event.c"
"${LIBRARY_DIR}/src/ticker.c"
"${LIBRARY_DIR}/src/tsd.c"
"${LIBRARY_DIR}/src/witness.c"
)
if (OS_DARWIN)
list(APPEND SRCS "${LIBRARY_DIR}/src/zone.c")
endif ()
add_library(_jemalloc ${SRCS})
# First include jemalloc-cmake files, to override anything that jemalloc has.
# (for example if you were trying to build jemalloc inside contrib/jemalloc you
# will have some files that may be out of date)
target_include_directories(_jemalloc SYSTEM PUBLIC include)
target_include_directories(_jemalloc PRIVATE "${LIBRARY_DIR}/include")
set (JEMALLOC_INCLUDE_PREFIX)
# OS_
if (OS_LINUX)
set (JEMALLOC_INCLUDE_PREFIX "include_linux")
elseif (OS_FREEBSD)
set (JEMALLOC_INCLUDE_PREFIX "include_freebsd")
elseif (OS_DARWIN)
set (JEMALLOC_INCLUDE_PREFIX "include_darwin")
else ()
message (FATAL_ERROR "internal jemalloc: This OS is not supported")
endif ()
# ARCH_
if (ARCH_AMD64)
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if (USE_MUSL)
set(JEMALLOC_INCLUDE_PREFIX "${JEMALLOC_INCLUDE_PREFIX}_x86_64_musl")
else()
set(JEMALLOC_INCLUDE_PREFIX "${JEMALLOC_INCLUDE_PREFIX}_x86_64")
endif()
elseif (ARCH_AARCH64)
set(JEMALLOC_INCLUDE_PREFIX "${JEMALLOC_INCLUDE_PREFIX}_aarch64")
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elseif (ARCH_PPC64LE)
set(JEMALLOC_INCLUDE_PREFIX "${JEMALLOC_INCLUDE_PREFIX}_ppc64le")
elseif (ARCH_RISCV64)
set(JEMALLOC_INCLUDE_PREFIX "${JEMALLOC_INCLUDE_PREFIX}_riscv64")
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elseif (ARCH_S390X)
set(JEMALLOC_INCLUDE_PREFIX "${JEMALLOC_INCLUDE_PREFIX}_s390x")
else ()
message (FATAL_ERROR "internal jemalloc: This arch is not supported")
endif ()
configure_file(${JEMALLOC_INCLUDE_PREFIX}/jemalloc/internal/jemalloc_internal_defs.h.in
${JEMALLOC_INCLUDE_PREFIX}/jemalloc/internal/jemalloc_internal_defs.h)
target_include_directories(_jemalloc SYSTEM PRIVATE
"${CMAKE_CURRENT_BINARY_DIR}/${JEMALLOC_INCLUDE_PREFIX}/jemalloc/internal")
target_compile_definitions(_jemalloc PRIVATE -DJEMALLOC_NO_PRIVATE_NAMESPACE)
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# Because our coverage callbacks call malloc, and recursive call of malloc could not work.
target_compile_options(_jemalloc PRIVATE ${WITHOUT_COVERAGE_FLAGS_LIST})
target_compile_definitions(_jemalloc PRIVATE -DJEMALLOC_PROF=1)
Fix possible deadlock for jemalloc with enabled profiler ClickHouse uses JEMALLOC_PROF_LIBGCC - _Unwind_Backtrace() for jemalloc, which calls _Unwind_Backtrace() during bootstrap of jemalloc, and if, dlsym() has allocations it will lead to deadlock: 0 __lll_lock_wait (futex=futex@entry=0x16516410 <init_lock+64>, private=0) at lowlevellock.c:52 1 0x00007ffff7f9d0a3 in __GI___pthread_mutex_lock (mutex=0x16516410 <init_lock+64>) at ../nptl/pthread_mutex_lock.c:80 2 0x000000000ba6ec23 in pthread_mutex_lock (arg=arg@entry=0x16516410 <init_lock+64>) at ./build/RelWithDebInfo/./src/Common/ThreadFuzzer.cpp:445 3 0x0000000014215fd4 in malloc_mutex_lock_final (mutex=0x165163d0 <init_lock>) at ./contrib/jemalloc/include/jemalloc/internal/mutex.h:151 4 malloc_mutex_lock_slow (mutex=0x165163d0 <init_lock>) at ./build/RelWithDebInfo/./contrib/jemalloc/src/mutex.c:90 5 0x00000000141defc6 in malloc_mutex_lock (tsdn=0x0, mutex=<optimized out>) at ./contrib/jemalloc/include/jemalloc/internal/mutex.h:217 6 malloc_init_hard () at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:2118 7 0x00000000141d05db in malloc_init () at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:298 8 imalloc_init_check (sopts=<optimized out>, dopts=<optimized out>) at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:2658 9 imalloc (sopts=<optimized out>, dopts=<optimized out>) at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:2689 10 calloc (num=num@entry=1, size=size@entry=32) at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:2852 11 0x00007ffff7c42c05 in _dlerror_run (operate=operate@entry=0x7ffff7c42490 <dlsym_doit>, args=args@entry=0x7fffffffda40) at dlerror.c:148 12 0x00007ffff7c42525 in __dlsym (handle=<optimized out>, name=0xe7f568 "dl_iterate_phdr") at dlsym.c:70 13 0x000000001408e1a0 in (anonymous namespace)::getOriginalDLIteratePHDR () at ./build/RelWithDebInfo/./base/base/phdr_cache.cpp:44 14 dl_iterate_phdr (callback=0x16287a60 <libunwind::findUnwindSectionsByPhdr(dl_phdr_info*, unsigned long, void*)>, data=0x7fffffffdb58) at ./build/RelWithDebInfo/./base/base/phdr_cache.cpp:64 15 0x0000000016288468 in libunwind::LocalAddressSpace::findUnwindSections (this=<optimized out>, targetAddr=371765377, info=...) at ./contrib/libunwind/src/AddressSpace.hpp:605 16 libunwind::UnwindCursor<libunwind::LocalAddressSpace, libunwind::Registers_x86_64>::setInfoBasedOnIPRegister (this=this@entry=0x7fffffffde70, isReturnAddress=false) at ./contrib/libunwind/src/UnwindCursor.hpp:2553 17 0x0000000016287617 in __unw_init_local (cursor=cursor@entry=0x7fffffffde70, context=context@entry=0x7fffffffddc8) at ./build/RelWithDebInfo/./contrib/libunwind/src/libunwind.cpp:91 18 0x000000001628b094 in _Unwind_Backtrace (callback=0x14226f40 <prof_unwind_init_callback>, ref=0x0) at ./build/RelWithDebInfo/./contrib/libunwind/src/UnwindLevel1-gcc-ext.c:106 19 0x000000001421a7e0 in prof_boot2 (tsd=tsd@entry=0x7ffff7c357c0, base=<optimized out>) at ./build/RelWithDebInfo/./contrib/jemalloc/src/prof.c:693 20 0x00000000141df3e7 in malloc_init_hard () at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:2151 21 0x00000000141d96f1 in malloc_init () at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:298 22 nallocx (size=32, flags=0) at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:4011 23 0x000000000b9fdd9b in _ZN6Memory23getActualAllocationSizeITpTkNSt3__17same_asISt11align_val_tEEJEQsr2DBE16OptionalArgumentIDpT_EEEmmS5_ (size=32) at ./src/Common/memory.h:197 24 _ZN6Memory11trackMemoryITpTkNSt3__17same_asISt11align_val_tEEJEQsr2DBE16OptionalArgumentIDpT_EEEmmR15AllocationTraceS5_ (size=32, trace=...) at ./src/Common/memory.h:208 25 operator new (size=size@entry=32) at ./build/RelWithDebInfo/./src/Common/new_delete.cpp:53 26 0x000000001540e0a6 in google::protobuf::internal::ShutdownData::get () at ./build/RelWithDebInfo/./contrib/google-protobuf/src/google/protobuf/message_lite.cc:679 27 google::protobuf::internal::OnShutdownRun (f=0x15407420 <google::protobuf::internal::DestroyString(void const*)>, arg=0x167a6368 <google::protobuf::internal::fixed_address_empty_string>) at ./build/RelWithDebInfo/./contrib/google-protobuf/src/google/protobuf/message_lite.cc:697 28 0x0000000015407560 in global constructors keyed to 000101 () at ./contrib/google-protobuf/src/google/protobuf/generated_message_util.h:180 29 0x000000001629101d in __libc_csu_init () 30 0x00007ffff7dba010 in __libc_start_main (main=0x66e3b00 <main(int, char**)>, argc=4, argv=0x7fffffffe258, init=0x16290fd0 <__libc_csu_init>, fini=<optimized out>, rtld_fini=<optimized out>, stack_end=0x7fffffffe248) at ../csu/libc-start.c:264 31 0x00000000066e302e in _start () And this is indeed what happens for glibc prio 2.34, since only in [2] the allocation had been removed [2]: https://sourceware.org/git/?p=glibc.git;a=commit;h=fada9018199c21c469ff0e731ef75c6020074ac9 But, jemalloc provides also JEMALLOC_PROF_LIBUNWIND, yes it is not llvm libunwind, but gnu one, but ClickHouse version of llvm libunwind provides unw_backtrace(), so we can use it, and it will not be called during jemalloc bootstrap, so deadlock should not be possible. Funny thing that for this deadlock the workaround is to enable background_thread, because a thread created for it will initialize TLS for __dlerror(). Signed-off-by: Azat Khuzhin <a.khuzhin@semrush.com>
2024-07-10 13:58:42 +00:00
# jemalloc provides support two unwind flavors:
# - JEMALLOC_PROF_LIBUNWIND - unw_backtrace() - gnu libunwind (compatible with llvm libunwind)
# - JEMALLOC_PROF_LIBGCC - _Unwind_Backtrace() - the original HP libunwind and the one coming with gcc / g++ / libstdc++.
#
Fix possible deadlock for jemalloc with enabled profiler ClickHouse uses JEMALLOC_PROF_LIBGCC - _Unwind_Backtrace() for jemalloc, which calls _Unwind_Backtrace() during bootstrap of jemalloc, and if, dlsym() has allocations it will lead to deadlock: 0 __lll_lock_wait (futex=futex@entry=0x16516410 <init_lock+64>, private=0) at lowlevellock.c:52 1 0x00007ffff7f9d0a3 in __GI___pthread_mutex_lock (mutex=0x16516410 <init_lock+64>) at ../nptl/pthread_mutex_lock.c:80 2 0x000000000ba6ec23 in pthread_mutex_lock (arg=arg@entry=0x16516410 <init_lock+64>) at ./build/RelWithDebInfo/./src/Common/ThreadFuzzer.cpp:445 3 0x0000000014215fd4 in malloc_mutex_lock_final (mutex=0x165163d0 <init_lock>) at ./contrib/jemalloc/include/jemalloc/internal/mutex.h:151 4 malloc_mutex_lock_slow (mutex=0x165163d0 <init_lock>) at ./build/RelWithDebInfo/./contrib/jemalloc/src/mutex.c:90 5 0x00000000141defc6 in malloc_mutex_lock (tsdn=0x0, mutex=<optimized out>) at ./contrib/jemalloc/include/jemalloc/internal/mutex.h:217 6 malloc_init_hard () at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:2118 7 0x00000000141d05db in malloc_init () at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:298 8 imalloc_init_check (sopts=<optimized out>, dopts=<optimized out>) at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:2658 9 imalloc (sopts=<optimized out>, dopts=<optimized out>) at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:2689 10 calloc (num=num@entry=1, size=size@entry=32) at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:2852 11 0x00007ffff7c42c05 in _dlerror_run (operate=operate@entry=0x7ffff7c42490 <dlsym_doit>, args=args@entry=0x7fffffffda40) at dlerror.c:148 12 0x00007ffff7c42525 in __dlsym (handle=<optimized out>, name=0xe7f568 "dl_iterate_phdr") at dlsym.c:70 13 0x000000001408e1a0 in (anonymous namespace)::getOriginalDLIteratePHDR () at ./build/RelWithDebInfo/./base/base/phdr_cache.cpp:44 14 dl_iterate_phdr (callback=0x16287a60 <libunwind::findUnwindSectionsByPhdr(dl_phdr_info*, unsigned long, void*)>, data=0x7fffffffdb58) at ./build/RelWithDebInfo/./base/base/phdr_cache.cpp:64 15 0x0000000016288468 in libunwind::LocalAddressSpace::findUnwindSections (this=<optimized out>, targetAddr=371765377, info=...) at ./contrib/libunwind/src/AddressSpace.hpp:605 16 libunwind::UnwindCursor<libunwind::LocalAddressSpace, libunwind::Registers_x86_64>::setInfoBasedOnIPRegister (this=this@entry=0x7fffffffde70, isReturnAddress=false) at ./contrib/libunwind/src/UnwindCursor.hpp:2553 17 0x0000000016287617 in __unw_init_local (cursor=cursor@entry=0x7fffffffde70, context=context@entry=0x7fffffffddc8) at ./build/RelWithDebInfo/./contrib/libunwind/src/libunwind.cpp:91 18 0x000000001628b094 in _Unwind_Backtrace (callback=0x14226f40 <prof_unwind_init_callback>, ref=0x0) at ./build/RelWithDebInfo/./contrib/libunwind/src/UnwindLevel1-gcc-ext.c:106 19 0x000000001421a7e0 in prof_boot2 (tsd=tsd@entry=0x7ffff7c357c0, base=<optimized out>) at ./build/RelWithDebInfo/./contrib/jemalloc/src/prof.c:693 20 0x00000000141df3e7 in malloc_init_hard () at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:2151 21 0x00000000141d96f1 in malloc_init () at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:298 22 nallocx (size=32, flags=0) at ./build/RelWithDebInfo/./contrib/jemalloc/src/jemalloc.c:4011 23 0x000000000b9fdd9b in _ZN6Memory23getActualAllocationSizeITpTkNSt3__17same_asISt11align_val_tEEJEQsr2DBE16OptionalArgumentIDpT_EEEmmS5_ (size=32) at ./src/Common/memory.h:197 24 _ZN6Memory11trackMemoryITpTkNSt3__17same_asISt11align_val_tEEJEQsr2DBE16OptionalArgumentIDpT_EEEmmR15AllocationTraceS5_ (size=32, trace=...) at ./src/Common/memory.h:208 25 operator new (size=size@entry=32) at ./build/RelWithDebInfo/./src/Common/new_delete.cpp:53 26 0x000000001540e0a6 in google::protobuf::internal::ShutdownData::get () at ./build/RelWithDebInfo/./contrib/google-protobuf/src/google/protobuf/message_lite.cc:679 27 google::protobuf::internal::OnShutdownRun (f=0x15407420 <google::protobuf::internal::DestroyString(void const*)>, arg=0x167a6368 <google::protobuf::internal::fixed_address_empty_string>) at ./build/RelWithDebInfo/./contrib/google-protobuf/src/google/protobuf/message_lite.cc:697 28 0x0000000015407560 in global constructors keyed to 000101 () at ./contrib/google-protobuf/src/google/protobuf/generated_message_util.h:180 29 0x000000001629101d in __libc_csu_init () 30 0x00007ffff7dba010 in __libc_start_main (main=0x66e3b00 <main(int, char**)>, argc=4, argv=0x7fffffffe258, init=0x16290fd0 <__libc_csu_init>, fini=<optimized out>, rtld_fini=<optimized out>, stack_end=0x7fffffffe248) at ../csu/libc-start.c:264 31 0x00000000066e302e in _start () And this is indeed what happens for glibc prio 2.34, since only in [2] the allocation had been removed [2]: https://sourceware.org/git/?p=glibc.git;a=commit;h=fada9018199c21c469ff0e731ef75c6020074ac9 But, jemalloc provides also JEMALLOC_PROF_LIBUNWIND, yes it is not llvm libunwind, but gnu one, but ClickHouse version of llvm libunwind provides unw_backtrace(), so we can use it, and it will not be called during jemalloc bootstrap, so deadlock should not be possible. Funny thing that for this deadlock the workaround is to enable background_thread, because a thread created for it will initialize TLS for __dlerror(). Signed-off-by: Azat Khuzhin <a.khuzhin@semrush.com>
2024-07-10 13:58:42 +00:00
# But for JEMALLOC_PROF_LIBGCC it also calls _Unwind_Backtrace() during
# bootstraping of jemalloc, which may lead to deadlock, if the dlsym will do
# allocations somewhere (like glibc does prio 2.34, see [1]).
#
# [1]: https://sourceware.org/git/?p=glibc.git;a=commit;h=fada9018199c21c469ff0e731ef75c6020074ac9
#
# And since ClickHouse unwind already supports unw_backtrace() we can safely
# switch to it to avoid this deadlock.
target_compile_definitions (_jemalloc PRIVATE -DJEMALLOC_PROF_LIBUNWIND=1)
target_link_libraries (_jemalloc PRIVATE unwind)
# for RTLD_NEXT
target_compile_options(_jemalloc PRIVATE -D_GNU_SOURCE)
add_library(ch_contrib::jemalloc ALIAS _jemalloc)