ClickHouse/tests/integration/test_merge_tree_s3_restore/test.py

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import os
import logging
import random
import string
import time
import pytest
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from helpers.cluster import ClickHouseCluster, get_instances_dir
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SCRIPT_DIR = os.path.dirname(os.path.realpath(__file__))
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NOT_RESTORABLE_CONFIG_PATH = os.path.join(SCRIPT_DIR, './{}/node_not_restorable/configs/config.d/storage_conf_not_restorable.xml'.format(get_instances_dir()))
COMMON_CONFIGS = ["configs/config.d/bg_processing_pool_conf.xml", "configs/config.d/clusters.xml"]
def replace_config(old, new):
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config = open(NOT_RESTORABLE_CONFIG_PATH, 'r')
config_lines = config.readlines()
config.close()
config_lines = [line.replace(old, new) for line in config_lines]
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config = open(NOT_RESTORABLE_CONFIG_PATH, 'w')
config.writelines(config_lines)
config.close()
@pytest.fixture(scope="module")
def cluster():
try:
cluster = ClickHouseCluster(__file__)
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cluster.add_instance("node",
main_configs=COMMON_CONFIGS + ["configs/config.d/storage_conf.xml"],
macros={"cluster": "node", "replica": "0"},
with_minio=True, with_zookeeper=True, stay_alive=True)
cluster.add_instance("node_another_bucket",
main_configs=COMMON_CONFIGS + ["configs/config.d/storage_conf_another_bucket.xml"],
macros={"cluster": "node_another_bucket", "replica": "0"},
with_zookeeper=True, stay_alive=True)
cluster.add_instance("node_another_bucket_path",
main_configs=COMMON_CONFIGS + ["configs/config.d/storage_conf_another_bucket_path.xml"],
stay_alive=True)
cluster.add_instance("node_not_restorable",
main_configs=COMMON_CONFIGS + ["configs/config.d/storage_conf_not_restorable.xml"],
stay_alive=True)
logging.info("Starting cluster...")
cluster.start()
logging.info("Cluster started")
yield cluster
finally:
cluster.shutdown()
def random_string(length):
letters = string.ascii_letters
return ''.join(random.choice(letters) for i in range(length))
def generate_values(date_str, count, sign=1):
data = [[date_str, sign * (i + 1), random_string(10)] for i in range(count)]
data.sort(key=lambda tup: tup[1])
return ",".join(["('{}',{},'{}',{})".format(x, y, z, 0) for x, y, z in data])
def create_table(node, table_name, attach=False, replicated=False, db_atomic=False, uuid=""):
node.query("CREATE DATABASE IF NOT EXISTS s3 ENGINE = {engine}".format(engine="Atomic" if db_atomic else "Ordinary"))
create_table_statement = """
{create} TABLE s3.{table_name} {uuid} {on_cluster} (
dt Date,
id Int64,
data String,
counter Int64,
INDEX min_max (id) TYPE minmax GRANULARITY 3
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) ENGINE={engine}
PARTITION BY dt
ORDER BY (dt, id)
SETTINGS
storage_policy='s3',
old_parts_lifetime=600,
index_granularity=512
""".format(create="ATTACH" if attach else "CREATE",
table_name=table_name,
uuid="UUID '{uuid}'".format(uuid=uuid) if db_atomic and uuid else "",
on_cluster="ON CLUSTER '{}'".format(node.name) if replicated else "",
engine="ReplicatedMergeTree('/clickhouse/tables/{cluster}/test', '{replica}')" if replicated else "MergeTree()")
node.query(create_table_statement)
def purge_s3(cluster, bucket):
minio = cluster.minio_client
for obj in list(minio.list_objects(bucket, recursive=True)):
if str(obj.object_name).find(".SCHEMA_VERSION") != -1:
continue
minio.remove_object(bucket, obj.object_name)
def drop_s3_metadata(node):
node.exec_in_container(['bash', '-c', 'rm -rf /var/lib/clickhouse/disks/s3/*'], user='root')
def drop_shadow_information(node):
node.exec_in_container(['bash', '-c', 'rm -rf /var/lib/clickhouse/shadow/*'], user='root')
def create_restore_file(node, revision=None, bucket=None, path=None, detached=None):
node.exec_in_container(['bash', '-c', 'mkdir -p /var/lib/clickhouse/disks/s3/'], user='root')
node.exec_in_container(['bash', '-c', 'touch /var/lib/clickhouse/disks/s3/restore'], user='root')
add_restore_option = 'echo -en "{}={}\n" >> /var/lib/clickhouse/disks/s3/restore'
if revision:
node.exec_in_container(['bash', '-c', add_restore_option.format('revision', revision)], user='root')
if bucket:
node.exec_in_container(['bash', '-c', add_restore_option.format('source_bucket', bucket)], user='root')
if path:
node.exec_in_container(['bash', '-c', add_restore_option.format('source_path', path)], user='root')
if detached:
node.exec_in_container(['bash', '-c', add_restore_option.format('detached', 'true')], user='root')
def get_revision_counter(node, backup_number):
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return int(node.exec_in_container(
['bash', '-c', 'cat /var/lib/clickhouse/disks/s3/shadow/{}/revision.txt'.format(backup_number)], user='root'))
def get_table_uuid(node, db_atomic, table):
uuid = ""
if db_atomic:
uuid = node.query("SELECT uuid FROM system.tables WHERE database='s3' AND table='{}' FORMAT TabSeparated".format(table)).strip()
return uuid
@pytest.fixture(autouse=True)
def drop_table(cluster):
yield
node_names = ["node", "node_another_bucket", "node_another_bucket_path", "node_not_restorable"]
for node_name in node_names:
node = cluster.instances[node_name]
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node.query("DROP TABLE IF EXISTS s3.test SYNC")
node.query("DROP DATABASE IF EXISTS s3 SYNC")
drop_s3_metadata(node)
drop_shadow_information(node)
buckets = [cluster.minio_bucket, cluster.minio_bucket_2]
for bucket in buckets:
purge_s3(cluster, bucket)
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@pytest.mark.parametrize(
"replicated", [False, True]
)
@pytest.mark.parametrize(
"db_atomic", [False, True]
)
def test_full_restore(cluster, replicated, db_atomic):
node = cluster.instances["node"]
create_table(node, "test", attach=False, replicated=replicated, db_atomic=db_atomic)
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-03', 4096)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-04', 4096, -1)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-05', 4096)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-05', 4096, -1)))
node.query("DETACH TABLE s3.test")
drop_s3_metadata(node)
create_restore_file(node)
node.query("SYSTEM RESTART DISK s3")
node.query("ATTACH TABLE s3.test")
assert node.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(4096 * 4)
assert node.query("SELECT sum(id) FROM s3.test FORMAT Values") == "({})".format(0)
@pytest.mark.parametrize(
"db_atomic", [False, True]
)
def test_restore_another_bucket_path(cluster, db_atomic):
node = cluster.instances["node"]
create_table(node, "test", db_atomic=db_atomic)
uuid = get_table_uuid(node, db_atomic, "test")
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-03', 4096)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-04', 4096, -1)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-05', 4096)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-05', 4096, -1)))
# To ensure parts have merged
node.query("OPTIMIZE TABLE s3.test")
assert node.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(4096 * 4)
assert node.query("SELECT sum(id) FROM s3.test FORMAT Values") == "({})".format(0)
node_another_bucket = cluster.instances["node_another_bucket"]
create_restore_file(node_another_bucket, bucket="root")
node_another_bucket.query("SYSTEM RESTART DISK s3")
create_table(node_another_bucket, "test", attach=True, db_atomic=db_atomic, uuid=uuid)
assert node_another_bucket.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(4096 * 4)
assert node_another_bucket.query("SELECT sum(id) FROM s3.test FORMAT Values") == "({})".format(0)
node_another_bucket_path = cluster.instances["node_another_bucket_path"]
create_restore_file(node_another_bucket_path, bucket="root2", path="data")
node_another_bucket_path.query("SYSTEM RESTART DISK s3")
create_table(node_another_bucket_path, "test", attach=True, db_atomic=db_atomic, uuid=uuid)
assert node_another_bucket_path.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(4096 * 4)
assert node_another_bucket_path.query("SELECT sum(id) FROM s3.test FORMAT Values") == "({})".format(0)
@pytest.mark.parametrize(
"db_atomic", [False, True]
)
def test_restore_different_revisions(cluster, db_atomic):
node = cluster.instances["node"]
create_table(node, "test", db_atomic=db_atomic)
uuid = get_table_uuid(node, db_atomic, "test")
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-03', 4096)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-04', 4096, -1)))
node.query("ALTER TABLE s3.test FREEZE")
revision1 = get_revision_counter(node, 1)
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-05', 4096)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-05', 4096, -1)))
node.query("ALTER TABLE s3.test FREEZE")
revision2 = get_revision_counter(node, 2)
# To ensure parts have merged
node.query("OPTIMIZE TABLE s3.test")
node.query("ALTER TABLE s3.test FREEZE")
revision3 = get_revision_counter(node, 3)
assert node.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(4096 * 4)
assert node.query("SELECT sum(id) FROM s3.test FORMAT Values") == "({})".format(0)
assert node.query("SELECT count(*) from system.parts where table = 'test'") == '5\n'
node_another_bucket = cluster.instances["node_another_bucket"]
# Restore to revision 1 (2 parts).
create_restore_file(node_another_bucket, revision=revision1, bucket="root")
node_another_bucket.query("SYSTEM RESTART DISK s3")
create_table(node_another_bucket, "test", attach=True, db_atomic=db_atomic, uuid=uuid)
assert node_another_bucket.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(4096 * 2)
assert node_another_bucket.query("SELECT sum(id) FROM s3.test FORMAT Values") == "({})".format(0)
assert node_another_bucket.query("SELECT count(*) from system.parts where table = 'test'") == '2\n'
# Restore to revision 2 (4 parts).
node_another_bucket.query("DETACH TABLE s3.test")
create_restore_file(node_another_bucket, revision=revision2, bucket="root")
node_another_bucket.query("SYSTEM RESTART DISK s3")
node_another_bucket.query("ATTACH TABLE s3.test")
assert node_another_bucket.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(4096 * 4)
assert node_another_bucket.query("SELECT sum(id) FROM s3.test FORMAT Values") == "({})".format(0)
assert node_another_bucket.query("SELECT count(*) from system.parts where table = 'test'") == '4\n'
# Restore to revision 3 (4 parts + 1 merged).
node_another_bucket.query("DETACH TABLE s3.test")
create_restore_file(node_another_bucket, revision=revision3, bucket="root")
node_another_bucket.query("SYSTEM RESTART DISK s3")
node_another_bucket.query("ATTACH TABLE s3.test")
assert node_another_bucket.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(4096 * 4)
assert node_another_bucket.query("SELECT sum(id) FROM s3.test FORMAT Values") == "({})".format(0)
assert node_another_bucket.query("SELECT count(*) from system.parts where table = 'test'") == '5\n'
@pytest.mark.parametrize(
"db_atomic", [False, True]
)
def test_restore_mutations(cluster, db_atomic):
node = cluster.instances["node"]
create_table(node, "test", db_atomic=db_atomic)
uuid = get_table_uuid(node, db_atomic, "test")
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-03', 4096)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-03', 4096, -1)))
node.query("ALTER TABLE s3.test FREEZE")
revision_before_mutation = get_revision_counter(node, 1)
node.query("ALTER TABLE s3.test UPDATE counter = 1 WHERE 1", settings={"mutations_sync": 2})
node.query("ALTER TABLE s3.test FREEZE")
revision_after_mutation = get_revision_counter(node, 2)
node_another_bucket = cluster.instances["node_another_bucket"]
# Restore to revision before mutation.
create_restore_file(node_another_bucket, revision=revision_before_mutation, bucket="root")
node_another_bucket.query("SYSTEM RESTART DISK s3")
create_table(node_another_bucket, "test", attach=True, db_atomic=db_atomic, uuid=uuid)
assert node_another_bucket.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(4096 * 2)
assert node_another_bucket.query("SELECT sum(id) FROM s3.test FORMAT Values") == "({})".format(0)
assert node_another_bucket.query("SELECT sum(counter) FROM s3.test FORMAT Values") == "({})".format(0)
# Restore to revision after mutation.
node_another_bucket.query("DETACH TABLE s3.test")
create_restore_file(node_another_bucket, revision=revision_after_mutation, bucket="root")
node_another_bucket.query("SYSTEM RESTART DISK s3")
node_another_bucket.query("ATTACH TABLE s3.test")
assert node_another_bucket.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(4096 * 2)
assert node_another_bucket.query("SELECT sum(id) FROM s3.test FORMAT Values") == "({})".format(0)
assert node_another_bucket.query("SELECT sum(counter) FROM s3.test FORMAT Values") == "({})".format(4096 * 2)
assert node_another_bucket.query("SELECT sum(counter) FROM s3.test WHERE id > 0 FORMAT Values") == "({})".format(4096)
# Restore to revision in the middle of mutation.
# Unfinished mutation should be completed after table startup.
node_another_bucket.query("DETACH TABLE s3.test")
revision = (revision_before_mutation + revision_after_mutation) // 2
create_restore_file(node_another_bucket, revision=revision, bucket="root")
node_another_bucket.query("SYSTEM RESTART DISK s3")
node_another_bucket.query("ATTACH TABLE s3.test")
# Wait for unfinished mutation completion.
time.sleep(3)
assert node_another_bucket.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(4096 * 2)
assert node_another_bucket.query("SELECT sum(id) FROM s3.test FORMAT Values") == "({})".format(0)
assert node_another_bucket.query("SELECT sum(counter) FROM s3.test FORMAT Values") == "({})".format(4096 * 2)
assert node_another_bucket.query("SELECT sum(counter) FROM s3.test WHERE id > 0 FORMAT Values") == "({})".format(4096)
@pytest.mark.parametrize(
"db_atomic", [False, True]
)
def test_migrate_to_restorable_schema(cluster, db_atomic):
node = cluster.instances["node_not_restorable"]
create_table(node, "test", db_atomic=db_atomic)
uuid = get_table_uuid(node, db_atomic, "test")
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-03', 4096)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-04', 4096, -1)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-05', 4096)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-05', 4096, -1)))
replace_config("<send_metadata>false</send_metadata>", "<send_metadata>true</send_metadata>")
node.restart_clickhouse()
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-06', 4096)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-06', 4096, -1)))
node.query("ALTER TABLE s3.test FREEZE")
revision = get_revision_counter(node, 1)
assert revision != 0
node_another_bucket = cluster.instances["node_another_bucket"]
# Restore to revision before mutation.
create_restore_file(node_another_bucket, revision=revision, bucket="root", path="another_data")
node_another_bucket.query("SYSTEM RESTART DISK s3")
create_table(node_another_bucket, "test", attach=True, db_atomic=db_atomic, uuid=uuid)
assert node_another_bucket.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(4096 * 6)
assert node_another_bucket.query("SELECT sum(id) FROM s3.test FORMAT Values") == "({})".format(0)
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@pytest.mark.parametrize(
"replicated", [False, True]
)
@pytest.mark.parametrize(
"db_atomic", [False, True]
)
def test_restore_to_detached(cluster, replicated, db_atomic):
node = cluster.instances["node"]
create_table(node, "test", attach=False, replicated=replicated, db_atomic=db_atomic)
uuid = get_table_uuid(node, db_atomic, "test")
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-03', 4096)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-04', 4096, -1)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-05', 4096)))
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-06', 4096, -1)))
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node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-07', 4096, 0)))
# Add some mutation.
node.query("ALTER TABLE s3.test UPDATE counter = 1 WHERE 1", settings={"mutations_sync": 2})
# Detach some partition.
node.query("ALTER TABLE s3.test DETACH PARTITION '2020-01-07'")
node.query("ALTER TABLE s3.test FREEZE")
revision = get_revision_counter(node, 1)
node_another_bucket = cluster.instances["node_another_bucket"]
create_restore_file(node_another_bucket, revision=revision, bucket="root", path="data", detached=True)
node_another_bucket.query("SYSTEM RESTART DISK s3")
create_table(node_another_bucket, "test", replicated=replicated, db_atomic=db_atomic, uuid=uuid)
assert node_another_bucket.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(0)
node_another_bucket.query("ALTER TABLE s3.test ATTACH PARTITION '2020-01-03'")
node_another_bucket.query("ALTER TABLE s3.test ATTACH PARTITION '2020-01-04'")
node_another_bucket.query("ALTER TABLE s3.test ATTACH PARTITION '2020-01-05'")
node_another_bucket.query("ALTER TABLE s3.test ATTACH PARTITION '2020-01-06'")
assert node_another_bucket.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(4096 * 4)
assert node_another_bucket.query("SELECT sum(id) FROM s3.test FORMAT Values") == "({})".format(0)
assert node_another_bucket.query("SELECT sum(counter) FROM s3.test FORMAT Values") == "({})".format(4096 * 4)
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# Attach partition that was already detached before backup-restore.
node_another_bucket.query("ALTER TABLE s3.test ATTACH PARTITION '2020-01-07'")
assert node_another_bucket.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(4096 * 5)
assert node_another_bucket.query("SELECT sum(id) FROM s3.test FORMAT Values") == "({})".format(0)
assert node_another_bucket.query("SELECT sum(counter) FROM s3.test FORMAT Values") == "({})".format(4096 * 5)
@pytest.mark.parametrize(
"replicated", [False, True]
)
@pytest.mark.parametrize(
"db_atomic", [False, True]
)
def test_restore_without_detached(cluster, replicated, db_atomic):
node = cluster.instances["node"]
create_table(node, "test", attach=False, replicated=replicated, db_atomic=db_atomic)
uuid = get_table_uuid(node, db_atomic, "test")
node.query("INSERT INTO s3.test VALUES {}".format(generate_values('2020-01-03', 1)))
assert node.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(1)
node.query("ALTER TABLE s3.test FREEZE")
revision = get_revision_counter(node, 1)
node_another_bucket = cluster.instances["node_another_bucket"]
create_restore_file(node_another_bucket, revision=revision, bucket="root", path="data", detached=True)
node_another_bucket.query("SYSTEM RESTART DISK s3")
create_table(node_another_bucket, "test", replicated=replicated, db_atomic=db_atomic, uuid=uuid)
assert node_another_bucket.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(0)
node_another_bucket.query("ALTER TABLE s3.test ATTACH PARTITION '2020-01-03'")
assert node_another_bucket.query("SELECT count(*) FROM s3.test FORMAT Values") == "({})".format(1)