ClickHouse/src/Storages/StorageS3.cpp

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#include <Common/config.h>
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#include "Parsers/ASTCreateQuery.h"
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#if USE_AWS_S3
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#include <Columns/ColumnString.h>
#include <Common/isValidUTF8.h>
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#include <Functions/FunctionsConversion.h>
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#include <IO/S3Common.h>
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#include <Interpreters/ExpressionAnalyzer.h>
#include <Interpreters/TreeRewriter.h>
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#include <Interpreters/evaluateConstantExpression.h>
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#include <Parsers/ASTFunction.h>
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#include <Parsers/ASTInsertQuery.h>
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#include <Parsers/ASTLiteral.h>
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#include <Storages/StorageFactory.h>
#include <Storages/StorageS3.h>
#include <Storages/StorageS3Settings.h>
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#include <Storages/PartitionedSink.h>
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#include <IO/ReadBufferFromS3.h>
#include <IO/WriteBufferFromS3.h>
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#include <IO/WriteHelpers.h>
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#include <Formats/FormatFactory.h>
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#include <Processors/Transforms/AddingDefaultsTransform.h>
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#include <Processors/Formats/IOutputFormat.h>
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#include <Processors/Formats/IInputFormat.h>
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#include <QueryPipeline/narrowBlockInputStreams.h>
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#include <QueryPipeline/QueryPipelineBuilder.h>
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#include <Processors/Executors/PullingPipelineExecutor.h>
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#include <DataTypes/DataTypeString.h>
#include <aws/core/auth/AWSCredentials.h>
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#include <aws/s3/S3Client.h>
#include <aws/s3/model/ListObjectsV2Request.h>
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#include <aws/s3/model/CopyObjectRequest.h>
#include <aws/s3/model/DeleteObjectsRequest.h>
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#include <Common/parseGlobs.h>
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#include <Common/quoteString.h>
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#include <re2/re2.h>
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#include <Processors/Sources/SourceWithProgress.h>
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#include <Processors/Sinks/SinkToStorage.h>
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#include <QueryPipeline/Pipe.h>
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#include <filesystem>
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namespace fs = std::filesystem;
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static const String PARTITION_ID_WILDCARD = "{_partition_id}";
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namespace DB
{
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namespace ErrorCodes
{
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extern const int CANNOT_PARSE_TEXT;
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extern const int BAD_ARGUMENTS;
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extern const int NUMBER_OF_ARGUMENTS_DOESNT_MATCH;
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extern const int S3_ERROR;
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extern const int UNEXPECTED_EXPRESSION;
extern const int CANNOT_OPEN_FILE;
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}
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class IOutputFormat;
using OutputFormatPtr = std::shared_ptr<IOutputFormat>;
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class StorageS3Source::DisclosedGlobIterator::Impl
{
public:
Impl(Aws::S3::S3Client & client_, const S3::URI & globbed_uri_)
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: client(client_), globbed_uri(globbed_uri_)
{
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std::lock_guard lock(mutex);
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if (globbed_uri.bucket.find_first_of("*?{") != globbed_uri.bucket.npos)
throw Exception("Expression can not have wildcards inside bucket name", ErrorCodes::UNEXPECTED_EXPRESSION);
const String key_prefix = globbed_uri.key.substr(0, globbed_uri.key.find_first_of("*?{"));
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/// We don't have to list bucket, because there is no asterisks.
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if (key_prefix.size() == globbed_uri.key.size())
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{
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buffer.emplace_back(globbed_uri.key);
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buffer_iter = buffer.begin();
is_finished = true;
return;
}
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request.SetBucket(globbed_uri.bucket);
request.SetPrefix(key_prefix);
matcher = std::make_unique<re2::RE2>(makeRegexpPatternFromGlobs(globbed_uri.key));
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fillInternalBufferAssumeLocked();
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}
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String next()
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{
std::lock_guard lock(mutex);
return nextAssumeLocked();
}
private:
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String nextAssumeLocked()
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{
if (buffer_iter != buffer.end())
{
auto answer = *buffer_iter;
++buffer_iter;
return answer;
}
if (is_finished)
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return {};
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fillInternalBufferAssumeLocked();
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return nextAssumeLocked();
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}
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void fillInternalBufferAssumeLocked()
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{
buffer.clear();
outcome = client.ListObjectsV2(request);
if (!outcome.IsSuccess())
throw Exception(ErrorCodes::S3_ERROR, "Could not list objects in bucket {} with prefix {}, S3 exception: {}, message: {}",
quoteString(request.GetBucket()), quoteString(request.GetPrefix()),
backQuote(outcome.GetError().GetExceptionName()), quoteString(outcome.GetError().GetMessage()));
const auto & result_batch = outcome.GetResult().GetContents();
buffer.reserve(result_batch.size());
for (const auto & row : result_batch)
{
String key = row.GetKey();
if (re2::RE2::FullMatch(key, *matcher))
buffer.emplace_back(std::move(key));
}
/// Set iterator only after the whole batch is processed
buffer_iter = buffer.begin();
request.SetContinuationToken(outcome.GetResult().GetNextContinuationToken());
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/// It returns false when all objects were returned
is_finished = !outcome.GetResult().GetIsTruncated();
}
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std::mutex mutex;
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Strings buffer;
Strings::iterator buffer_iter;
Aws::S3::S3Client client;
S3::URI globbed_uri;
Aws::S3::Model::ListObjectsV2Request request;
Aws::S3::Model::ListObjectsV2Outcome outcome;
std::unique_ptr<re2::RE2> matcher;
bool is_finished{false};
};
StorageS3Source::DisclosedGlobIterator::DisclosedGlobIterator(Aws::S3::S3Client & client_, const S3::URI & globbed_uri_)
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: pimpl(std::make_shared<StorageS3Source::DisclosedGlobIterator::Impl>(client_, globbed_uri_)) {}
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String StorageS3Source::DisclosedGlobIterator::next()
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{
return pimpl->next();
}
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Block StorageS3Source::getHeader(Block sample_block, bool with_path_column, bool with_file_column)
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{
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if (with_path_column)
sample_block.insert({DataTypeString().createColumn(), std::make_shared<DataTypeString>(), "_path"});
if (with_file_column)
sample_block.insert({DataTypeString().createColumn(), std::make_shared<DataTypeString>(), "_file"});
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return sample_block;
}
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StorageS3Source::StorageS3Source(
bool need_path,
bool need_file,
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const String & format_,
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String name_,
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const Block & sample_block_,
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ContextPtr context_,
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std::optional<FormatSettings> format_settings_,
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const ColumnsDescription & columns_,
UInt64 max_block_size_,
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UInt64 max_single_read_retries_,
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const String compression_hint_,
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const std::shared_ptr<Aws::S3::S3Client> & client_,
const String & bucket_,
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std::shared_ptr<IteratorWrapper> file_iterator_)
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: SourceWithProgress(getHeader(sample_block_, need_path, need_file))
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, WithContext(context_)
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, name(std::move(name_))
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, bucket(bucket_)
, format(format_)
, columns_desc(columns_)
, max_block_size(max_block_size_)
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, max_single_read_retries(max_single_read_retries_)
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, compression_hint(compression_hint_)
, client(client_)
, sample_block(sample_block_)
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, format_settings(format_settings_)
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, with_file_column(need_file)
, with_path_column(need_path)
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, file_iterator(file_iterator_)
{
initialize();
}
bool StorageS3Source::initialize()
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{
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String current_key = (*file_iterator)();
if (current_key.empty())
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return false;
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file_path = fs::path(bucket) / current_key;
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read_buf = wrapReadBufferWithCompressionMethod(
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std::make_unique<ReadBufferFromS3>(client, bucket, current_key, max_single_read_retries, getContext()->getReadSettings()),
chooseCompressionMethod(current_key, compression_hint));
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auto input_format = getContext()->getInputFormat(format, *read_buf, sample_block, max_block_size, format_settings);
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QueryPipelineBuilder builder;
builder.init(Pipe(input_format));
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if (columns_desc.hasDefaults())
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{
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builder.addSimpleTransform([&](const Block & header)
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{
return std::make_shared<AddingDefaultsTransform>(header, columns_desc, *input_format, getContext());
});
}
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pipeline = std::make_unique<QueryPipeline>(QueryPipelineBuilder::getPipeline(std::move(builder)));
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reader = std::make_unique<PullingPipelineExecutor>(*pipeline);
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initialized = false;
return true;
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}
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String StorageS3Source::getName() const
{
return name;
}
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Chunk StorageS3Source::generate()
{
if (!reader)
return {};
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Chunk chunk;
if (reader->pull(chunk))
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{
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UInt64 num_rows = chunk.getNumRows();
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if (with_path_column)
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chunk.addColumn(DataTypeString().createColumnConst(num_rows, file_path)->convertToFullColumnIfConst());
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if (with_file_column)
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{
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size_t last_slash_pos = file_path.find_last_of('/');
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chunk.addColumn(DataTypeString().createColumnConst(num_rows, file_path.substr(
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last_slash_pos + 1))->convertToFullColumnIfConst());
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}
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return chunk;
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}
reader.reset();
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pipeline.reset();
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read_buf.reset();
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if (!initialize())
return {};
return generate();
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}
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class StorageS3Sink : public SinkToStorage
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{
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public:
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StorageS3Sink(
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const String & format,
const Block & sample_block_,
ContextPtr context,
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std::optional<FormatSettings> format_settings_,
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const CompressionMethod compression_method,
const std::shared_ptr<Aws::S3::S3Client> & client,
const String & bucket,
const String & key,
size_t min_upload_part_size,
size_t max_single_part_upload_size)
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: SinkToStorage(sample_block_)
, sample_block(sample_block_)
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, format_settings(format_settings_)
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{
if (key.find_first_of("*?{") != std::string::npos)
throw Exception(ErrorCodes::CANNOT_OPEN_FILE, "S3 key '{}' contains globs, so the table is in readonly mode", key);
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write_buf = wrapWriteBufferWithCompressionMethod(
std::make_unique<WriteBufferFromS3>(client, bucket, key, min_upload_part_size, max_single_part_upload_size), compression_method, 3);
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writer = FormatFactory::instance().getOutputFormatParallelIfPossible(format, *write_buf, sample_block, context, {}, format_settings);
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}
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String getName() const override { return "StorageS3Sink"; }
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void consume(Chunk chunk) override
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{
writer->write(getHeader().cloneWithColumns(chunk.detachColumns()));
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}
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void onFinish() override
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{
try
{
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writer->finalize();
writer->flush();
write_buf->finalize();
}
catch (...)
{
/// Stop ParallelFormattingOutputFormat correctly.
writer.reset();
throw;
}
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}
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private:
Block sample_block;
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std::optional<FormatSettings> format_settings;
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std::unique_ptr<WriteBuffer> write_buf;
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OutputFormatPtr writer;
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};
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class PartitionedStorageS3Sink : public PartitionedSink
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{
public:
PartitionedStorageS3Sink(
const ASTPtr & partition_by,
const String & format_,
const Block & sample_block_,
ContextPtr context_,
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std::optional<FormatSettings> format_settings_,
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const CompressionMethod compression_method_,
const std::shared_ptr<Aws::S3::S3Client> & client_,
const String & bucket_,
const String & key_,
size_t min_upload_part_size_,
size_t max_single_part_upload_size_)
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: PartitionedSink(partition_by, context_, sample_block_)
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, format(format_)
, sample_block(sample_block_)
, context(context_)
, compression_method(compression_method_)
, client(client_)
, bucket(bucket_)
, key(key_)
, min_upload_part_size(min_upload_part_size_)
, max_single_part_upload_size(max_single_part_upload_size_)
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, format_settings(format_settings_)
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{
}
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SinkPtr createSinkForPartition(const String & partition_id) override
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{
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auto partition_bucket = replaceWildcards(bucket, partition_id);
validateBucket(partition_bucket);
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auto partition_key = replaceWildcards(key, partition_id);
validateKey(partition_key);
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return std::make_shared<StorageS3Sink>(
format,
sample_block,
context,
format_settings,
compression_method,
client,
partition_bucket,
partition_key,
min_upload_part_size,
max_single_part_upload_size
);
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}
private:
const String format;
const Block sample_block;
ContextPtr context;
const CompressionMethod compression_method;
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std::shared_ptr<Aws::S3::S3Client> client;
const String bucket;
const String key;
size_t min_upload_part_size;
size_t max_single_part_upload_size;
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std::optional<FormatSettings> format_settings;
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ExpressionActionsPtr partition_by_expr;
String partition_by_column_name;
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static void validateBucket(const String & str)
{
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S3::URI::validateBucket(str, {});
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if (!DB::UTF8::isValidUTF8(reinterpret_cast<const UInt8 *>(str.data()), str.size()))
throw Exception(ErrorCodes::CANNOT_PARSE_TEXT, "Incorrect non-UTF8 sequence in bucket name");
validatePartitionKey(str, false);
}
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static void validateKey(const String & str)
{
/// See:
/// - https://docs.aws.amazon.com/AmazonS3/latest/userguide/object-keys.html
/// - https://cloud.ibm.com/apidocs/cos/cos-compatibility#putobject
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if (str.empty() || str.size() > 1024)
throw Exception(ErrorCodes::BAD_ARGUMENTS, "Incorrect key length (not empty, max 1023 characters), got: {}", str.size());
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if (!DB::UTF8::isValidUTF8(reinterpret_cast<const UInt8 *>(str.data()), str.size()))
throw Exception(ErrorCodes::CANNOT_PARSE_TEXT, "Incorrect non-UTF8 sequence in key");
validatePartitionKey(str, true);
}
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};
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StorageS3::StorageS3(
const S3::URI & uri_,
const String & access_key_id_,
const String & secret_access_key_,
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const StorageID & table_id_,
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const String & format_name_,
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UInt64 max_single_read_retries_,
UInt64 min_upload_part_size_,
UInt64 max_single_part_upload_size_,
UInt64 max_connections_,
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const ColumnsDescription & columns_,
const ConstraintsDescription & constraints_,
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const String & comment,
ContextPtr context_,
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std::optional<FormatSettings> format_settings_,
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const String & compression_method_,
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bool distributed_processing_,
ASTPtr partition_by_)
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: IStorage(table_id_)
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, client_auth{uri_, access_key_id_, secret_access_key_, max_connections_, {}, {}} /// Client and settings will be updated later
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, format_name(format_name_)
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, max_single_read_retries(max_single_read_retries_)
, min_upload_part_size(min_upload_part_size_)
, max_single_part_upload_size(max_single_part_upload_size_)
, compression_method(compression_method_)
, name(uri_.storage_name)
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, distributed_processing(distributed_processing_)
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, format_settings(format_settings_)
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, partition_by(partition_by_)
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{
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context_->getGlobalContext()->getRemoteHostFilter().checkURL(uri_.uri);
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StorageInMemoryMetadata storage_metadata;
storage_metadata.setColumns(columns_);
storage_metadata.setConstraints(constraints_);
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storage_metadata.setComment(comment);
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setInMemoryMetadata(storage_metadata);
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updateClientAndAuthSettings(context_, client_auth);
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}
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Pipe StorageS3::read(
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const Names & column_names,
const StorageMetadataPtr & metadata_snapshot,
SelectQueryInfo & /*query_info*/,
ContextPtr local_context,
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QueryProcessingStage::Enum /*processed_stage*/,
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size_t max_block_size,
unsigned num_streams)
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{
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updateClientAndAuthSettings(local_context, client_auth);
Pipes pipes;
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bool need_path_column = false;
bool need_file_column = false;
for (const auto & column : column_names)
{
if (column == "_path")
need_path_column = true;
if (column == "_file")
need_file_column = true;
}
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std::shared_ptr<StorageS3Source::IteratorWrapper> iterator_wrapper{nullptr};
if (distributed_processing)
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{
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iterator_wrapper = std::make_shared<StorageS3Source::IteratorWrapper>(
[callback = local_context->getReadTaskCallback()]() -> String {
return callback();
});
}
else
{
/// Iterate through disclosed globs and make a source for each file
auto glob_iterator = std::make_shared<StorageS3Source::DisclosedGlobIterator>(*client_auth.client, client_auth.uri);
iterator_wrapper = std::make_shared<StorageS3Source::IteratorWrapper>([glob_iterator]()
{
return glob_iterator->next();
});
}
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for (size_t i = 0; i < num_streams; ++i)
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{
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pipes.emplace_back(std::make_shared<StorageS3Source>(
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need_path_column,
need_file_column,
format_name,
getName(),
metadata_snapshot->getSampleBlock(),
local_context,
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format_settings,
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metadata_snapshot->getColumns(),
max_block_size,
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max_single_read_retries,
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compression_method,
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client_auth.client,
client_auth.uri.bucket,
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iterator_wrapper));
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}
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auto pipe = Pipe::unitePipes(std::move(pipes));
narrowPipe(pipe, num_streams);
return pipe;
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}
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SinkToStoragePtr StorageS3::write(const ASTPtr & query, const StorageMetadataPtr & metadata_snapshot, ContextPtr local_context)
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{
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updateClientAndAuthSettings(local_context, client_auth);
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auto sample_block = metadata_snapshot->getSampleBlock();
auto chosen_compression_method = chooseCompressionMethod(client_auth.uri.key, compression_method);
bool has_wildcards = client_auth.uri.bucket.find(PARTITION_ID_WILDCARD) != String::npos || client_auth.uri.key.find(PARTITION_ID_WILDCARD) != String::npos;
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auto insert_query = std::dynamic_pointer_cast<ASTInsertQuery>(query);
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auto partition_by_ast = insert_query ? (insert_query->partition_by ? insert_query->partition_by : partition_by) : nullptr;
bool is_partitioned_implementation = partition_by_ast && has_wildcards;
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if (is_partitioned_implementation)
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{
return std::make_shared<PartitionedStorageS3Sink>(
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partition_by_ast,
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format_name,
sample_block,
local_context,
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format_settings,
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chosen_compression_method,
client_auth.client,
client_auth.uri.bucket,
client_auth.uri.key,
min_upload_part_size,
max_single_part_upload_size);
}
else
{
return std::make_shared<StorageS3Sink>(
format_name,
sample_block,
local_context,
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format_settings,
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chosen_compression_method,
client_auth.client,
client_auth.uri.bucket,
client_auth.uri.key,
min_upload_part_size,
max_single_part_upload_size);
}
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}
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void StorageS3::truncate(const ASTPtr & /* query */, const StorageMetadataPtr &, ContextPtr local_context, TableExclusiveLockHolder &)
{
updateClientAndAuthSettings(local_context, client_auth);
Aws::S3::Model::ObjectIdentifier obj;
obj.SetKey(client_auth.uri.key);
Aws::S3::Model::Delete delkeys;
delkeys.AddObjects(std::move(obj));
Aws::S3::Model::DeleteObjectsRequest request;
request.SetBucket(client_auth.uri.bucket);
request.SetDelete(delkeys);
auto response = client_auth.client->DeleteObjects(request);
if (!response.IsSuccess())
{
const auto & err = response.GetError();
throw Exception(std::to_string(static_cast<int>(err.GetErrorType())) + ": " + err.GetMessage(), ErrorCodes::S3_ERROR);
}
}
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void StorageS3::updateClientAndAuthSettings(ContextPtr ctx, StorageS3::ClientAuthentication & upd)
{
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auto settings = ctx->getStorageS3Settings().getSettings(upd.uri.uri.toString());
if (upd.client && (!upd.access_key_id.empty() || settings == upd.auth_settings))
return;
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Aws::Auth::AWSCredentials credentials(upd.access_key_id, upd.secret_access_key);
HeaderCollection headers;
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if (upd.access_key_id.empty())
{
credentials = Aws::Auth::AWSCredentials(settings.access_key_id, settings.secret_access_key);
headers = settings.headers;
}
S3::PocoHTTPClientConfiguration client_configuration = S3::ClientFactory::instance().createClientConfiguration(
settings.region,
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ctx->getRemoteHostFilter(), ctx->getGlobalContext()->getSettingsRef().s3_max_redirects);
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client_configuration.endpointOverride = upd.uri.endpoint;
client_configuration.maxConnections = upd.max_connections;
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upd.client = S3::ClientFactory::instance().create(
client_configuration,
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upd.uri.is_virtual_hosted_style,
credentials.GetAWSAccessKeyId(),
credentials.GetAWSSecretKey(),
settings.server_side_encryption_customer_key_base64,
std::move(headers),
settings.use_environment_credentials.value_or(ctx->getConfigRef().getBool("s3.use_environment_credentials", false)),
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settings.use_insecure_imds_request.value_or(ctx->getConfigRef().getBool("s3.use_insecure_imds_request", false)));
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upd.auth_settings = std::move(settings);
}
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StorageS3Configuration StorageS3::getConfiguration(ASTs & engine_args, ContextPtr local_context)
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{
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StorageS3Configuration configuration;
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if (auto named_collection = getURLBasedDataSourceConfiguration(engine_args, local_context))
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{
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auto [common_configuration, storage_specific_args] = named_collection.value();
configuration.set(common_configuration);
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for (const auto & [arg_name, arg_value] : storage_specific_args)
{
if (arg_name == "access_key_id")
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configuration.access_key_id = arg_value->as<ASTLiteral>()->value.safeGet<String>();
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else if (arg_name == "secret_access_key")
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configuration.secret_access_key = arg_value->as<ASTLiteral>()->value.safeGet<String>();
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else
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throw Exception(ErrorCodes::NUMBER_OF_ARGUMENTS_DOESNT_MATCH,
"Unknown key-value argument `{}` for StorageS3, expected: url, [access_key_id, secret_access_key], name of used format and [compression_method].",
arg_name);
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}
}
else
{
if (engine_args.size() < 2 || engine_args.size() > 5)
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throw Exception(
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"Storage S3 requires 2 to 5 arguments: url, [access_key_id, secret_access_key], name of used format and [compression_method].",
ErrorCodes::NUMBER_OF_ARGUMENTS_DOESNT_MATCH);
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for (auto & engine_arg : engine_args)
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engine_arg = evaluateConstantExpressionOrIdentifierAsLiteral(engine_arg, local_context);
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configuration.url = engine_args[0]->as<ASTLiteral &>().value.safeGet<String>();
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if (engine_args.size() >= 4)
{
configuration.access_key_id = engine_args[1]->as<ASTLiteral &>().value.safeGet<String>();
configuration.secret_access_key = engine_args[2]->as<ASTLiteral &>().value.safeGet<String>();
}
if (engine_args.size() == 3 || engine_args.size() == 5)
{
configuration.compression_method = engine_args.back()->as<ASTLiteral &>().value.safeGet<String>();
configuration.format = engine_args[engine_args.size() - 2]->as<ASTLiteral &>().value.safeGet<String>();
}
else
{
configuration.compression_method = "auto";
configuration.format = engine_args.back()->as<ASTLiteral &>().value.safeGet<String>();
}
}
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return configuration;
}
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void registerStorageS3Impl(const String & name, StorageFactory & factory)
{
factory.registerStorage(name, [](const StorageFactory::Arguments & args)
{
auto & engine_args = args.engine_args;
if (engine_args.empty())
throw Exception(ErrorCodes::BAD_ARGUMENTS, "External data source must have arguments");
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auto configuration = StorageS3::getConfiguration(engine_args, args.getLocalContext());
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// Use format settings from global server context + settings from
// the SETTINGS clause of the create query. Settings from current
// session and user are ignored.
std::optional<FormatSettings> format_settings;
if (args.storage_def->settings)
{
FormatFactorySettings user_format_settings;
// Apply changed settings from global context, but ignore the
// unknown ones, because we only have the format settings here.
const auto & changes = args.getContext()->getSettingsRef().changes();
for (const auto & change : changes)
{
if (user_format_settings.has(change.name))
user_format_settings.set(change.name, change.value);
}
// Apply changes from SETTINGS clause, with validation.
user_format_settings.applyChanges(args.storage_def->settings->changes);
format_settings = getFormatSettings(args.getContext(), user_format_settings);
}
else
{
format_settings = getFormatSettings(args.getContext());
}
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S3::URI s3_uri(Poco::URI(configuration.url));
auto max_single_read_retries = args.getLocalContext()->getSettingsRef().s3_max_single_read_retries;
auto min_upload_part_size = args.getLocalContext()->getSettingsRef().s3_min_upload_part_size;
auto max_single_part_upload_size = args.getLocalContext()->getSettingsRef().s3_max_single_part_upload_size;
auto max_connections = args.getLocalContext()->getSettingsRef().s3_max_connections;
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ASTPtr partition_by;
if (args.storage_def->partition_by)
partition_by = args.storage_def->partition_by->clone();
return StorageS3::create(
s3_uri,
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configuration.access_key_id,
configuration.secret_access_key,
args.table_id,
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configuration.format,
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max_single_read_retries,
min_upload_part_size,
max_single_part_upload_size,
max_connections,
args.columns,
args.constraints,
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args.comment,
args.getContext(),
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format_settings,
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configuration.compression_method,
/* distributed_processing_ */false,
partition_by);
},
{
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.supports_settings = true,
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.supports_sort_order = true, // for partition by
.source_access_type = AccessType::S3,
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});
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}
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void registerStorageS3(StorageFactory & factory)
{
return registerStorageS3Impl("S3", factory);
}
void registerStorageCOS(StorageFactory & factory)
{
return registerStorageS3Impl("COSN", factory);
}
NamesAndTypesList StorageS3::getVirtuals() const
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{
return NamesAndTypesList{
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{"_path", std::make_shared<DataTypeString>()},
{"_file", std::make_shared<DataTypeString>()}
};
}
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bool StorageS3::supportsPartitionBy() const
{
return true;
}
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}
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#endif