ClickHouse/tests/integration/test_replicated_mutations/test.py

import logging
import random
import threading
import time
from collections import Counter

import pytest
from helpers.cluster import ClickHouseCluster

cluster = ClickHouseCluster(__file__)

node1 = cluster.add_instance('node1', macros={'cluster': 'test1'}, with_zookeeper=True)
# Check, that limits on max part size for merges doesn`t affect mutations
node2 = cluster.add_instance('node2', macros={'cluster': 'test1'}, main_configs=["configs/merge_tree.xml"],
                             with_zookeeper=True)

node3 = cluster.add_instance('node3', macros={'cluster': 'test2'}, main_configs=["configs/merge_tree_max_parts.xml"],
                             with_zookeeper=True)
node4 = cluster.add_instance('node4', macros={'cluster': 'test2'}, main_configs=["configs/merge_tree_max_parts.xml"],
                             with_zookeeper=True)

node5 = cluster.add_instance('node5', macros={'cluster': 'test3'}, main_configs=["configs/merge_tree_max_parts.xml"])

all_nodes = [node1, node2, node3, node4, node5]

def prepare_cluster():
    for node in all_nodes:
        node.query("DROP TABLE IF EXISTS test_mutations SYNC")

    for node in [node1, node2, node3, node4]:
        node.query("""
        CREATE TABLE test_mutations(d Date, x UInt32, i UInt32)
        ENGINE ReplicatedMergeTree('/clickhouse/{cluster}/tables/test/test_mutations', '{instance}')
        ORDER BY x
        PARTITION BY toYYYYMM(d)
        SETTINGS number_of_free_entries_in_pool_to_execute_mutation=0
        """)

    node5.query(
        "CREATE TABLE test_mutations(d Date, x UInt32, i UInt32) ENGINE MergeTree() ORDER BY x PARTITION BY toYYYYMM(d)")


@pytest.fixture(scope="module")
def started_cluster():
    try:
        cluster.start()
        yield cluster

    finally:
        cluster.shutdown()


class Runner:
    def __init__(self, nodes):
        self.nodes = nodes
        self.mtx = threading.Lock()
        self.total_inserted_xs = 0
        self.total_inserted_rows = 0

        self.total_mutations = 0
        self.total_deleted_xs = 0
        self.total_deleted_rows = 0

        self.current_xs = Counter()

        self.currently_inserting_xs = Counter()
        self.currently_deleting_xs = set()

        self.stop_ev = threading.Event()

        self.exceptions = []

    def do_insert(self, thread_num, partitions_num):
        self.stop_ev.wait(random.random())

        # Each thread inserts a small random number of rows with random year, month 01 and day determined
        # by the thread number. The idea is to avoid spurious duplicates and to insert into a
        # nontrivial number of partitions.
        month = '01'
        day = str(thread_num + 1).zfill(2)
        i = 1
        while not self.stop_ev.is_set():
            xs = [random.randint(1, 10) for _ in range(random.randint(1, 10))]
            with self.mtx:
                xs = [x for x in xs if x not in self.currently_deleting_xs]
                if len(xs) == 0:
                    continue
                for x in xs:
                    self.currently_inserting_xs[x] += 1

            year = 2000 + random.randint(0, partitions_num)
            date_str = '{year}-{month}-{day}'.format(year=year, month=month, day=day)
            payload = ''
            for x in xs:
                payload += '{date_str}	{x}	{i}\n'.format(date_str=date_str, x=x, i=i)
                i += 1

            try:
                logging.debug(f"thread {thread_num}: insert for {date_str}: {xs}")
                random.choice(self.nodes).query("INSERT INTO test_mutations FORMAT TSV", payload)

                with self.mtx:
                    for x in xs:
                        self.current_xs[x] += 1
                    self.total_inserted_xs += sum(xs)
                    self.total_inserted_rows += len(xs)

            except Exception as e:
                logging.debug(f"Exception while inserting: {e}")
                self.exceptions.append(e)
            finally:
                with self.mtx:
                    for x in xs:
                        self.currently_inserting_xs[x] -= 1

            self.stop_ev.wait(0.2 + random.random() / 5)

    def do_delete(self, thread_num):
        self.stop_ev.wait(1.0 + random.random())

        while not self.stop_ev.is_set():
            chosen = False
            with self.mtx:
                if self.current_xs:
                    x = random.choice(list(self.current_xs.elements()))

                    if self.currently_inserting_xs[x] == 0 and x not in self.currently_deleting_xs:
                        chosen = True
                        self.currently_deleting_xs.add(x)
                        to_delete_count = self.current_xs[x]

            if not chosen:
                self.stop_ev.wait(0.1 * random.random())
                continue

            try:
                logging.debug(f"thread {thread_num}: delete {to_delete_count} * {x}")
                random.choice(self.nodes).query("ALTER TABLE test_mutations DELETE WHERE x = {}".format(x))

                with self.mtx:
                    self.total_mutations += 1
                    self.current_xs[x] -= to_delete_count
                    self.total_deleted_xs += to_delete_count * x
                    self.total_deleted_rows += to_delete_count

            except Exception as e:
                logging.debug(f"Exception while deleting: {e}")
            finally:
                with self.mtx:
                    self.currently_deleting_xs.remove(x)

            self.stop_ev.wait(1.0 + random.random() * 2)


def wait_for_mutations(nodes, number_of_mutations):
    for i in range(100):  # wait for replication 80 seconds max
        time.sleep(0.8)

        def get_done_mutations(node):
            return int(node.query("SELECT sum(is_done) FROM system.mutations WHERE table = 'test_mutations'").rstrip())

        if all([get_done_mutations(n) == number_of_mutations for n in nodes]):
            return True
    return False


def test_mutations(started_cluster):
    prepare_cluster()

    DURATION_SECONDS = 30
    nodes = [node1, node2]

    runner = Runner(nodes)

    threads = []
    for thread_num in range(5):
        threads.append(threading.Thread(target=runner.do_insert, args=(thread_num, 10)))

    for thread_num in (11, 12, 13):
        threads.append(threading.Thread(target=runner.do_delete, args=(thread_num,)))

    for t in threads:
        t.start()

    time.sleep(DURATION_SECONDS)
    runner.stop_ev.set()

    for t in threads:
        t.join()

    # Sanity check: at least something was inserted and something was deleted
    assert runner.total_inserted_rows > 0
    assert runner.total_mutations > 0

    all_done = wait_for_mutations(nodes, runner.total_mutations)
    logging.debug(f"Total mutations: {runner.total_mutations}")
    for node in nodes:
        logging.debug(node.query(
            "SELECT mutation_id, command, parts_to_do, is_done FROM system.mutations WHERE table = 'test_mutations' FORMAT TSVWithNames"))
    assert all_done

    expected_sum = runner.total_inserted_xs - runner.total_deleted_xs
    actual_sums = []
    for i, node in enumerate(nodes):
        actual_sums.append(int(node.query("SELECT sum(x) FROM test_mutations").rstrip()))
        assert actual_sums[i] == expected_sum


@pytest.mark.parametrize(
    ('nodes',),
    [
        ([node5, ],),  # MergeTree
        ([node3, node4],),  # ReplicatedMergeTree
    ]
)
def test_mutations_dont_prevent_merges(started_cluster, nodes):
    prepare_cluster()

    for year in range(2000, 2016):
        rows = ''
        date_str = '{}-01-{}'.format(year, random.randint(1, 10))
        for i in range(10):
            rows += '{}	{}	{}\n'.format(date_str, random.randint(1, 10), i)
        nodes[0].query("INSERT INTO test_mutations FORMAT TSV", rows)

    # will run mutations of 16 parts in parallel, mutations will sleep for about 20 seconds
    nodes[0].query("ALTER TABLE test_mutations UPDATE i = sleepEachRow(2) WHERE 1")

    runner = Runner(nodes)
    threads = []
    for thread_num in range(2):
        threads.append(threading.Thread(target=runner.do_insert, args=(thread_num, 0)))

    # will insert approx 8-10 new parts per 1 second into one partition
    for t in threads:
        t.start()

    all_done = wait_for_mutations(nodes, 1)

    runner.stop_ev.set()
    for t in threads:
        t.join()

    for node in nodes:
        logging.debug(node.query(
            "SELECT mutation_id, command, parts_to_do, is_done FROM system.mutations WHERE table = 'test_mutations' FORMAT TSVWithNames"))
        logging.debug(node.query(
            "SELECT partition, count(name), sum(active), sum(active*rows) FROM system.parts WHERE table ='test_mutations' GROUP BY partition FORMAT TSVWithNames"))

    assert all_done, "All done"
    assert all([str(e).find("Too many parts") < 0 for e in runner.exceptions])