ClickHouse/dbms/src/Storages/MergeTree/MergeTreeData.cpp

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#include <Storages/MergeTree/MergeTreeData.h>
#include <Interpreters/ExpressionAnalyzer.h>
#include <Storages/MergeTree/MergeTreeBlockInputStream.h>
#include <Storages/MergeTree/MergedBlockOutputStream.h>
#include <Storages/MergeTree/checkDataPart.h>
#include <Storages/AlterCommands.h>
#include <Parsers/ASTIdentifier.h>
#include <Parsers/ASTNameTypePair.h>
#include <Parsers/ASTLiteral.h>
#include <Parsers/ASTFunction.h>
#include <Parsers/ASTPartition.h>
#include <Parsers/ExpressionListParsers.h>
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#include <Parsers/parseQuery.h>
#include <DataStreams/ExpressionBlockInputStream.h>
#include <DataStreams/ValuesRowInputStream.h>
#include <DataStreams/copyData.h>
#include <IO/WriteBufferFromFile.h>
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#include <IO/WriteBufferFromString.h>
#include <IO/CompressedReadBuffer.h>
#include <IO/ReadBufferFromMemory.h>
#include <IO/ConcatReadBuffer.h>
#include <IO/HexWriteBuffer.h>
#include <IO/Operators.h>
#include <DataTypes/DataTypeDate.h>
#include <DataTypes/DataTypeDateTime.h>
#include <DataTypes/DataTypeEnum.h>
#include <DataTypes/NestedUtils.h>
#include <DataTypes/DataTypeArray.h>
#include <DataTypes/DataTypeNullable.h>
#include <Functions/FunctionFactory.h>
#include <Functions/IFunction.h>
#include <Common/Increment.h>
#include <Common/SimpleIncrement.h>
#include <Common/escapeForFileName.h>
#include <Common/StringUtils.h>
#include <Common/Stopwatch.h>
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#include <Common/typeid_cast.h>
#include <Common/localBackup.h>
#include <Poco/DirectoryIterator.h>
#include <boost/range/adaptor/filtered.hpp>
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#include <algorithm>
#include <iomanip>
#include <thread>
#include <typeinfo>
#include <typeindex>
#include <optional>
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namespace ProfileEvents
{
extern const Event RejectedInserts;
extern const Event DelayedInserts;
extern const Event DelayedInsertsMilliseconds;
}
namespace CurrentMetrics
{
extern const Metric DelayedInserts;
}
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namespace DB
{
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namespace ErrorCodes
{
extern const int MEMORY_LIMIT_EXCEEDED;
extern const int SYNTAX_ERROR;
extern const int CORRUPTED_DATA;
extern const int INVALID_PARTITION_VALUE;
extern const int METADATA_MISMATCH;
extern const int PART_IS_TEMPORARILY_LOCKED;
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}
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MergeTreeData::MergeTreeData(
const String & database_, const String & table_,
const String & full_path_, const NamesAndTypesList & columns_,
const NamesAndTypesList & materialized_columns_,
const NamesAndTypesList & alias_columns_,
const ColumnDefaults & column_defaults_,
Context & context_,
const ASTPtr & primary_expr_ast_,
const String & date_column_name,
const ASTPtr & partition_expr_ast_,
const ASTPtr & sampling_expression_,
const MergingParams & merging_params_,
const MergeTreeSettings & settings_,
bool require_part_metadata_,
bool attach,
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BrokenPartCallback broken_part_callback_)
: ITableDeclaration{materialized_columns_, alias_columns_, column_defaults_}, context(context_),
sampling_expression(sampling_expression_),
index_granularity(settings_.index_granularity),
merging_params(merging_params_),
settings(settings_),
primary_expr_ast(primary_expr_ast_),
partition_expr_ast(partition_expr_ast_),
require_part_metadata(require_part_metadata_),
database_name(database_), table_name(table_),
full_path(full_path_), columns(columns_),
broken_part_callback(broken_part_callback_),
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log_name(database_name + "." + table_name), log(&Logger::get(log_name + " (Data)")),
data_parts_by_name(data_parts_indexes.get<TagByName>()),
data_parts_by_state_and_name(data_parts_indexes.get<TagByStateAndName>())
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{
merging_params.check(columns);
if (primary_expr_ast && merging_params.mode == MergingParams::Unsorted)
throw Exception("Primary key cannot be set for UnsortedMergeTree", ErrorCodes::BAD_ARGUMENTS);
if (!primary_expr_ast && merging_params.mode != MergingParams::Unsorted)
throw Exception("Primary key can be empty only for UnsortedMergeTree", ErrorCodes::BAD_ARGUMENTS);
initPrimaryKey();
if (sampling_expression && (!primary_expr_ast || !primary_key_sample.has(sampling_expression->getColumnName()))
&& !attach && !settings.compatibility_allow_sampling_expression_not_in_primary_key) /// This is for backward compatibility.
throw Exception("Sampling expression must be present in the primary key", ErrorCodes::BAD_ARGUMENTS);
MergeTreeDataFormatVersion min_format_version(0);
if (!date_column_name.empty())
{
try
{
String partition_expr_str = "toYYYYMM(" + backQuoteIfNeed(date_column_name) + ")";
ParserNotEmptyExpressionList parser(/* allow_alias_without_as_keyword = */ false);
partition_expr_ast = parseQuery(
parser, partition_expr_str.data(), partition_expr_str.data() + partition_expr_str.length(), "partition expression");
initPartitionKey();
if (minmax_idx_date_column_pos == -1)
throw Exception("Could not find Date column", ErrorCodes::BAD_TYPE_OF_FIELD);
}
catch (Exception & e)
{
/// Better error message.
e.addMessage("(while initializing MergeTree partition key from date column `" + date_column_name + "`)");
throw;
}
}
else
{
initPartitionKey();
min_format_version = MERGE_TREE_DATA_MIN_FORMAT_VERSION_WITH_CUSTOM_PARTITIONING;
}
/// Creating directories, if not exist.
Poco::File(full_path).createDirectories();
Poco::File(full_path + "detached").createDirectory();
String version_file_path = full_path + "format_version.txt";
if (!attach)
{
format_version = min_format_version;
WriteBufferFromFile buf(version_file_path);
writeIntText(format_version.toUnderType(), buf);
}
else if (Poco::File(version_file_path).exists())
{
ReadBufferFromFile buf(version_file_path);
readIntText(format_version, buf);
if (!buf.eof())
throw Exception("Bad version file: " + version_file_path, ErrorCodes::CORRUPTED_DATA);
}
else
format_version = 0;
if (format_version < min_format_version)
throw Exception(
"MergeTree data format version on disk doesn't support custom partitioning",
ErrorCodes::METADATA_MISMATCH);
}
static void checkForAllowedKeyColumns(const ColumnWithTypeAndName & element, const std::string & key_name)
{
const ColumnPtr & column = element.column;
if (column && (column->isColumnConst() || column->isDummy()))
throw Exception{key_name + " key cannot contain constants", ErrorCodes::ILLEGAL_COLUMN};
if (element.type->isNullable())
throw Exception{key_name + " key cannot contain nullable columns", ErrorCodes::ILLEGAL_COLUMN};
}
void MergeTreeData::initPrimaryKey()
{
if (!primary_expr_ast)
return;
/// Initialize description of sorting.
sort_descr.clear();
sort_descr.reserve(primary_expr_ast->children.size());
for (const ASTPtr & ast : primary_expr_ast->children)
{
String name = ast->getColumnName();
sort_descr.emplace_back(name, 1, 1);
}
primary_expr = ExpressionAnalyzer(primary_expr_ast, context, nullptr, getColumnsList()).getActions(false);
ExpressionActionsPtr projected_expr = ExpressionAnalyzer(primary_expr_ast, context, nullptr, getColumnsList()).getActions(true);
primary_key_sample = projected_expr->getSampleBlock();
size_t primary_key_size = primary_key_sample.columns();
/// A primary key cannot contain constants. It is meaningless.
/// (And also couldn't work because primary key is serialized with method of IDataType that doesn't support constants).
/// Also a primary key must not contain any nullable column.
for (size_t i = 0; i < primary_key_size; ++i)
checkForAllowedKeyColumns(primary_key_sample.getByPosition(i), "Primary");
primary_key_data_types.resize(primary_key_size);
for (size_t i = 0; i < primary_key_size; ++i)
primary_key_data_types[i] = primary_key_sample.getByPosition(i).type;
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}
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void MergeTreeData::initPartitionKey()
{
if (!partition_expr_ast || partition_expr_ast->children.empty())
return;
partition_expr = ExpressionAnalyzer(partition_expr_ast, context, nullptr, getColumnsList()).getActions(false);
for (const ASTPtr & ast : partition_expr_ast->children)
{
String col_name = ast->getColumnName();
partition_expr_columns.emplace_back(col_name);
const ColumnWithTypeAndName & element = partition_expr->getSampleBlock().getByName(col_name);
checkForAllowedKeyColumns(element, "Partition");
partition_expr_column_types.emplace_back(element.type);
}
/// Add all columns used in the partition key to the min-max index.
const NamesAndTypesList & minmax_idx_columns_with_types = partition_expr->getRequiredColumnsWithTypes();
minmax_idx_expr = std::make_shared<ExpressionActions>(minmax_idx_columns_with_types, context.getSettingsRef());
for (const NameAndTypePair & column : minmax_idx_columns_with_types)
{
minmax_idx_columns.emplace_back(column.name);
minmax_idx_column_types.emplace_back(column.type);
minmax_idx_sort_descr.emplace_back(column.name, 1, 1);
}
/// Try to find the date column in columns used by the partition key (a common case).
bool encountered_date_column = false;
for (size_t i = 0; i < minmax_idx_column_types.size(); ++i)
{
if (typeid_cast<const DataTypeDate *>(minmax_idx_column_types[i].get()))
{
if (!encountered_date_column)
{
minmax_idx_date_column_pos = i;
encountered_date_column = true;
}
else
{
/// There is more than one Date column in partition key and we don't know which one to choose.
minmax_idx_date_column_pos = -1;
}
}
}
}
void MergeTreeData::MergingParams::check(const NamesAndTypesList & columns) const
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{
/// Check that if the sign column is needed, it exists and is of type Int8.
if (mode == MergingParams::Collapsing)
{
if (sign_column.empty())
throw Exception("Logical error: Sign column for storage CollapsingMergeTree is empty", ErrorCodes::LOGICAL_ERROR);
for (const auto & column : columns)
{
if (column.name == sign_column)
{
if (!typeid_cast<const DataTypeInt8 *>(column.type.get()))
throw Exception("Sign column (" + sign_column + ")"
" for storage CollapsingMergeTree must have type Int8."
" Provided column of type " + column.type->getName() + ".", ErrorCodes::BAD_TYPE_OF_FIELD);
break;
}
}
}
else if (!sign_column.empty())
throw Exception("Sign column for MergeTree cannot be specified in all modes except Collapsing.", ErrorCodes::LOGICAL_ERROR);
/// If colums_to_sum are set, then check that such columns exist.
if (!columns_to_sum.empty())
{
if (mode != MergingParams::Summing)
throw Exception("List of columns to sum for MergeTree cannot be specified in all modes except Summing.",
ErrorCodes::LOGICAL_ERROR);
for (const auto & column_to_sum : columns_to_sum)
if (columns.end() == std::find_if(columns.begin(), columns.end(),
[&](const NameAndTypePair & name_and_type) { return column_to_sum == Nested::extractTableName(name_and_type.name); }))
throw Exception("Column " + column_to_sum + " listed in columns to sum does not exist in table declaration.");
}
/// Check that version_column column is set only for Replacing mode and is of unsigned integer type.
if (!version_column.empty())
{
if (mode != MergingParams::Replacing)
throw Exception("Version column for MergeTree cannot be specified in all modes except Replacing.",
ErrorCodes::LOGICAL_ERROR);
for (const auto & column : columns)
{
if (column.name == version_column)
{
if (!typeid_cast<const DataTypeUInt8 *>(column.type.get())
&& !typeid_cast<const DataTypeUInt16 *>(column.type.get())
&& !typeid_cast<const DataTypeUInt32 *>(column.type.get())
&& !typeid_cast<const DataTypeUInt64 *>(column.type.get())
&& !typeid_cast<const DataTypeDate *>(column.type.get())
&& !typeid_cast<const DataTypeDateTime *>(column.type.get()))
throw Exception("Version column (" + version_column + ")"
" for storage ReplacingMergeTree must have type of UInt family or Date or DateTime."
" Provided column of type " + column.type->getName() + ".", ErrorCodes::BAD_TYPE_OF_FIELD);
break;
}
}
}
/// TODO Checks for Graphite mode.
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}
String MergeTreeData::MergingParams::getModeName() const
{
switch (mode)
{
case Ordinary: return "";
case Collapsing: return "Collapsing";
case Summing: return "Summing";
case Aggregating: return "Aggregating";
case Unsorted: return "Unsorted";
case Replacing: return "Replacing";
case Graphite: return "Graphite";
default:
throw Exception("Unknown mode of operation for MergeTreeData: " + toString<int>(mode), ErrorCodes::LOGICAL_ERROR);
}
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}
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Int64 MergeTreeData::getMaxDataPartIndex()
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{
std::lock_guard<std::mutex> lock_all(data_parts_mutex);
Int64 max_block_id = 0;
for (const DataPartPtr & part : data_parts_by_name)
max_block_id = std::max(max_block_id, part->info.max_block);
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return max_block_id;
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}
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void MergeTreeData::loadDataParts(bool skip_sanity_checks)
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{
LOG_DEBUG(log, "Loading data parts");
Strings part_file_names;
Poco::DirectoryIterator end;
for (Poco::DirectoryIterator it(full_path); it != end; ++it)
{
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/// Skip temporary directories.
if (startsWith(it.name(), "tmp"))
continue;
part_file_names.push_back(it.name());
}
DataPartsVector broken_parts_to_remove;
DataPartsVector broken_parts_to_detach;
size_t suspicious_broken_parts = 0;
std::lock_guard<std::mutex> lock(data_parts_mutex);
data_parts_indexes.clear();
for (const String & file_name : part_file_names)
{
MergeTreePartInfo part_info;
if (!MergeTreePartInfo::tryParsePartName(file_name, &part_info, format_version))
continue;
MutableDataPartPtr part = std::make_shared<DataPart>(*this, file_name, part_info);
part->relative_path = file_name;
bool broken = false;
try
{
part->loadColumnsChecksumsIndexes(require_part_metadata, true);
}
catch (const Exception & e)
{
/// Don't count the part as broken if there is not enough memory to load it.
/// In fact, there can be many similar situations.
/// But it is OK, because there is a safety guard against deleting too many parts.
if (e.code() == ErrorCodes::MEMORY_LIMIT_EXCEEDED)
throw;
broken = true;
tryLogCurrentException(__PRETTY_FUNCTION__);
}
catch (...)
{
broken = true;
tryLogCurrentException(__PRETTY_FUNCTION__);
}
/// Ignore and possibly delete broken parts that can appear as a result of hard server restart.
if (broken)
{
if (part->info.level == 0)
{
/// It is impossible to restore level 0 parts.
LOG_ERROR(log, "Considering to remove broken part " << full_path + file_name << " because it's impossible to repair.");
broken_parts_to_remove.push_back(part);
}
else
{
/// Count the number of parts covered by the broken part. If it is at least two, assume that
/// the broken part was created as a result of merging them and we won't lose data if we
/// delete it.
int contained_parts = 0;
LOG_ERROR(log, "Part " << full_path + file_name << " is broken. Looking for parts to replace it.");
for (const String & contained_name : part_file_names)
{
if (contained_name == file_name)
continue;
MergeTreePartInfo contained_part_info;
if (!MergeTreePartInfo::tryParsePartName(contained_name, &contained_part_info, format_version))
continue;
if (part->info.contains(contained_part_info))
{
LOG_ERROR(log, "Found part " << full_path + contained_name);
++contained_parts;
}
}
if (contained_parts >= 2)
{
LOG_ERROR(log, "Considering to remove broken part " << full_path + file_name << " because it covers at least 2 other parts");
broken_parts_to_remove.push_back(part);
}
else
{
LOG_ERROR(log, "Detaching broken part " << full_path + file_name
<< " because it covers less than 2 parts. You need to resolve this manually");
broken_parts_to_detach.push_back(part);
++suspicious_broken_parts;
}
}
continue;
}
part->modification_time = Poco::File(full_path + file_name).getLastModified().epochTime();
/// Assume that all parts are Committed, covered parts will be detected and marked as Outdated later
part->state = DataPartState::Committed;
if (!data_parts_indexes.insert(part).second)
throw Exception("Part " + part->name + " already exists", ErrorCodes::DUPLICATE_DATA_PART);
}
if (suspicious_broken_parts > settings.max_suspicious_broken_parts && !skip_sanity_checks)
throw Exception("Suspiciously many (" + toString(suspicious_broken_parts) + ") broken parts to remove.",
ErrorCodes::TOO_MANY_UNEXPECTED_DATA_PARTS);
for (auto & part : broken_parts_to_remove)
part->remove();
for (auto & part : broken_parts_to_detach)
part->renameAddPrefix(true, "");
/// Delete from the set of current parts those parts that are covered by another part (those parts that
/// were merged), but that for some reason are still not deleted from the filesystem.
/// Deletion of files will be performed later in the clearOldParts() method.
if (data_parts_indexes.size() >= 2)
{
/// Now all parts are committed, so data_parts_by_state_and_name == committed_parts_range
auto prev_jt = data_parts_by_state_and_name.begin();
auto curr_jt = std::next(prev_jt);
auto deactivate_part = [&] (DataPartIteratorByStateAndName it)
{
(*it)->remove_time = (*it)->modification_time;
modifyPartState(it, DataPartState::Outdated);
};
(*prev_jt)->assertState({DataPartState::Committed});
while (curr_jt != data_parts_by_state_and_name.end() && (*curr_jt)->state == DataPartState::Committed)
{
/// Don't consider data parts belonging to different partitions.
if ((*curr_jt)->info.partition_id != (*prev_jt)->info.partition_id)
{
++prev_jt;
++curr_jt;
continue;
}
if ((*curr_jt)->contains(**prev_jt))
{
deactivate_part(prev_jt);
prev_jt = curr_jt;
++curr_jt;
}
else if ((*prev_jt)->contains(**curr_jt))
{
auto next = std::next(curr_jt);
deactivate_part(curr_jt);
curr_jt = next;
}
else
{
++prev_jt;
++curr_jt;
}
}
}
calculateColumnSizesImpl();
LOG_DEBUG(log, "Loaded data parts (" << data_parts_indexes.size() << " items)");
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}
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/// Is the part directory old.
/// True if its modification time and the modification time of all files inside it is less then threshold.
/// (Only files on the first level of nesting are considered).
static bool isOldPartDirectory(Poco::File & directory, time_t threshold)
{
if (directory.getLastModified().epochTime() >= threshold)
return false;
Poco::DirectoryIterator end;
for (Poco::DirectoryIterator it(directory); it != end; ++it)
if (it->getLastModified().epochTime() >= threshold)
return false;
return true;
}
void MergeTreeData::clearOldTemporaryDirectories(ssize_t custom_directories_lifetime_seconds)
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{
/// If the method is already called from another thread, then we don't need to do anything.
std::unique_lock<std::mutex> lock(clear_old_temporary_directories_mutex, std::defer_lock);
if (!lock.try_lock())
return;
time_t current_time = time(nullptr);
ssize_t deadline = (custom_directories_lifetime_seconds >= 0)
? current_time - custom_directories_lifetime_seconds
: current_time - settings.temporary_directories_lifetime.totalSeconds();
/// Delete temporary directories older than a day.
Poco::DirectoryIterator end;
for (Poco::DirectoryIterator it{full_path}; it != end; ++it)
{
if (startsWith(it.name(), "tmp"))
{
Poco::File tmp_dir(full_path + it.name());
try
{
if (tmp_dir.isDirectory() && isOldPartDirectory(tmp_dir, deadline))
{
LOG_WARNING(log, "Removing temporary directory " << full_path << it.name());
Poco::File(full_path + it.name()).remove(true);
}
}
catch (const Poco::FileNotFoundException &)
{
/// If the file is already deleted, do nothing.
}
}
}
}
MergeTreeData::DataPartsVector MergeTreeData::grabOldParts()
{
DataPartsVector res;
/// If the method is already called from another thread, then we don't need to do anything.
std::unique_lock<std::mutex> lock(grab_old_parts_mutex, std::defer_lock);
if (!lock.try_lock())
return res;
time_t now = time(nullptr);
std::vector<DataPartIteratorByStateAndName> parts_to_delete;
{
std::lock_guard<std::mutex> lock_parts(data_parts_mutex);
auto outdated_parts_range = getDataPartsStateRange(DataPartState::Outdated);
for (auto it = outdated_parts_range.begin(); it != outdated_parts_range.end(); ++it)
{
const DataPartPtr & part = *it;
if (part.unique() && /// Grab only parts that is not using by anyone (SELECTs for example)
part->remove_time < now &&
now - part->remove_time > settings.old_parts_lifetime.totalSeconds())
{
parts_to_delete.emplace_back(it);
}
}
res.reserve(parts_to_delete.size());
for (const auto & it_to_delete : parts_to_delete)
{
res.emplace_back(*it_to_delete);
modifyPartState(it_to_delete, DataPartState::Deleting);
}
}
if (!res.empty())
LOG_TRACE(log, "Found " << res.size() << " old parts to remove.");
return res;
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}
void MergeTreeData::rollbackDeletingParts(const MergeTreeData::DataPartsVector & parts)
{
std::lock_guard<std::mutex> lock(data_parts_mutex);
for (auto & part : parts)
{
/// We should modify it under data_parts_mutex
part->assertState({DataPartState::Deleting});
modifyPartState(part, DataPartState::Outdated);
}
}
void MergeTreeData::removePartsFinally(const MergeTreeData::DataPartsVector & parts)
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{
std::lock_guard<std::mutex> lock(data_parts_mutex);
/// TODO: use data_parts iterators instead of pointers
for (auto & part : parts)
{
auto it = data_parts_by_name.find(part->info);
if (it == data_parts_by_name.end())
throw Exception("Deleting data part " + part->name + " is not exist", ErrorCodes::LOGICAL_ERROR);
(*it)->assertState({DataPartState::Deleting});
data_parts_indexes.erase(it);
}
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}
void MergeTreeData::clearOldPartsFromFilesystem()
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{
auto parts_to_remove = grabOldParts();
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for (const DataPartPtr & part : parts_to_remove)
{
LOG_DEBUG(log, "Removing part from filesystem " << part->name);
part->remove();
}
removePartsFinally(parts_to_remove);
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}
void MergeTreeData::setPath(const String & new_full_path)
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{
if (Poco::File{new_full_path}.exists())
throw Exception{
"Target path already exists: " + new_full_path,
/// @todo existing target can also be a file, not directory
ErrorCodes::DIRECTORY_ALREADY_EXISTS};
Poco::File(full_path).renameTo(new_full_path);
context.dropCaches();
full_path = new_full_path;
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}
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void MergeTreeData::dropAllData()
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{
LOG_TRACE(log, "dropAllData: waiting for locks.");
std::lock_guard<std::mutex> lock(data_parts_mutex);
LOG_TRACE(log, "dropAllData: removing data from memory.");
data_parts_indexes.clear();
column_sizes.clear();
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context.dropCaches();
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LOG_TRACE(log, "dropAllData: removing data from filesystem.");
Poco::File(full_path).remove(true);
LOG_TRACE(log, "dropAllData: done.");
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}
namespace
{
/// If true, then in order to ALTER the type of the column from the type from to the type to
/// we don't need to rewrite the data, we only need to update metadata and columns.txt in part directories.
/// The function works for Arrays and Nullables of the same structure.
bool isMetadataOnlyConversion(const IDataType * from, const IDataType * to)
{
if (from->getName() == to->getName())
return true;
static const std::unordered_multimap<std::type_index, const std::type_info &> ALLOWED_CONVERSIONS =
{
{ typeid(DataTypeEnum8), typeid(DataTypeEnum8) },
{ typeid(DataTypeEnum8), typeid(DataTypeInt8) },
{ typeid(DataTypeEnum16), typeid(DataTypeEnum16) },
{ typeid(DataTypeEnum16), typeid(DataTypeInt16) },
{ typeid(DataTypeDateTime), typeid(DataTypeUInt32) },
{ typeid(DataTypeUInt32), typeid(DataTypeDateTime) },
{ typeid(DataTypeDate), typeid(DataTypeUInt16) },
{ typeid(DataTypeUInt16), typeid(DataTypeDate) },
};
while (true)
{
auto it_range = ALLOWED_CONVERSIONS.equal_range(typeid(*from));
for (auto it = it_range.first; it != it_range.second; ++it)
{
if (it->second == typeid(*to))
return true;
}
const auto * arr_from = typeid_cast<const DataTypeArray *>(from);
const auto * arr_to = typeid_cast<const DataTypeArray *>(to);
if (arr_from && arr_to)
{
from = arr_from->getNestedType().get();
to = arr_to->getNestedType().get();
continue;
}
const auto * nullable_from = typeid_cast<const DataTypeNullable *>(from);
const auto * nullable_to = typeid_cast<const DataTypeNullable *>(to);
if (nullable_from && nullable_to)
{
from = nullable_from->getNestedType().get();
to = nullable_to->getNestedType().get();
continue;
}
return false;
}
}
}
void MergeTreeData::checkAlter(const AlterCommands & commands)
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{
/// Check that needed transformations can be applied to the list of columns without considering type conversions.
auto new_columns = columns;
auto new_materialized_columns = materialized_columns;
auto new_alias_columns = alias_columns;
auto new_column_defaults = column_defaults;
commands.apply(new_columns, new_materialized_columns, new_alias_columns, new_column_defaults);
/// Set of columns that shouldn't be altered.
NameSet columns_alter_forbidden;
/// Primary key columns can be ALTERed only if they are used in the key as-is
/// (and not as a part of some expression) and if the ALTER only affects column metadata.
NameSet columns_alter_metadata_only;
if (partition_expr)
{
/// Forbid altering partition key columns because it can change partition ID format.
/// TODO: in some cases (e.g. adding an Enum value) a partition key column can still be ALTERed.
/// We should allow it.
for (const String & col : partition_expr->getRequiredColumns())
columns_alter_forbidden.insert(col);
}
if (primary_expr)
{
for (const ExpressionAction & action : primary_expr->getActions())
{
auto action_columns = action.getNeededColumns();
columns_alter_forbidden.insert(action_columns.begin(), action_columns.end());
}
for (const String & col : primary_expr->getRequiredColumns())
columns_alter_metadata_only.insert(col);
}
/// We don't process sampling_expression separately because it must be among the primary key columns.
if (!merging_params.sign_column.empty())
columns_alter_forbidden.insert(merging_params.sign_column);
std::map<String, const IDataType *> old_types;
for (const auto & column : columns)
old_types.emplace(column.name, column.type.get());
for (const AlterCommand & command : commands)
{
if (columns_alter_forbidden.count(command.column_name))
throw Exception("trying to ALTER key column " + command.column_name, ErrorCodes::ILLEGAL_COLUMN);
if (columns_alter_metadata_only.count(command.column_name))
{
if (command.type == AlterCommand::MODIFY_COLUMN)
{
auto it = old_types.find(command.column_name);
if (it != old_types.end() && isMetadataOnlyConversion(it->second, command.data_type.get()))
continue;
}
throw Exception(
"ALTER of key column " + command.column_name + " must be metadata-only",
ErrorCodes::ILLEGAL_COLUMN);
}
}
/// Check that type conversions are possible.
ExpressionActionsPtr unused_expression;
NameToNameMap unused_map;
bool unused_bool;
/// augment plain columns with materialized columns for convert expression creation
new_columns.insert(std::end(new_columns),
std::begin(new_materialized_columns), std::end(new_materialized_columns));
createConvertExpression(nullptr, getColumnsList(), new_columns, unused_expression, unused_map, unused_bool);
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}
void MergeTreeData::createConvertExpression(const DataPartPtr & part, const NamesAndTypesList & old_columns, const NamesAndTypesList & new_columns,
ExpressionActionsPtr & out_expression, NameToNameMap & out_rename_map, bool & out_force_update_metadata) const
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{
out_expression = nullptr;
out_rename_map = {};
out_force_update_metadata = false;
using NameToType = std::map<String, const IDataType *>;
NameToType new_types;
for (const NameAndTypePair & column : new_columns)
new_types.emplace(column.name, column.type.get());
/// For every column that need to be converted: source column name, column name of calculated expression for conversion.
std::vector<std::pair<String, String>> conversions;
/// Collect counts for shared streams of different columns. As an example, Nested columns have shared stream with array sizes.
std::map<String, size_t> stream_counts;
for (const NameAndTypePair & column : old_columns)
{
column.type->enumerateStreams([&](const IDataType::SubstreamPath & substream_path)
{
++stream_counts[IDataType::getFileNameForStream(column.name, substream_path)];
}, {});
}
for (const NameAndTypePair & column : old_columns)
{
if (!new_types.count(column.name))
{
/// The column was deleted.
if (!part || part->hasColumnFiles(column.name))
{
column.type->enumerateStreams([&](const IDataType::SubstreamPath & substream_path)
{
String file_name = IDataType::getFileNameForStream(column.name, substream_path);
/// Delete files if they are no longer shared with another column.
if (--stream_counts[file_name] == 0)
{
out_rename_map[file_name + ".bin"] = "";
out_rename_map[file_name + ".mrk"] = "";
}
}, {});
}
}
else
{
/// The column was converted. Collect conversions.
const auto * new_type = new_types[column.name];
const String new_type_name = new_type->getName();
const auto * old_type = column.type.get();
if (!new_type->equals(*old_type) && (!part || part->hasColumnFiles(column.name)))
{
if (isMetadataOnlyConversion(old_type, new_type))
{
out_force_update_metadata = true;
continue;
}
/// Need to modify column type.
if (!out_expression)
out_expression = std::make_shared<ExpressionActions>(NamesAndTypesList(), context.getSettingsRef());
out_expression->addInput(ColumnWithTypeAndName(nullptr, column.type, column.name));
Names out_names;
/// This is temporary name for expression. TODO Invent the name more safely.
const String new_type_name_column = '#' + new_type_name + "_column";
out_expression->add(ExpressionAction::addColumn(
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{ DataTypeString().createColumnConst(1, new_type_name), std::make_shared<DataTypeString>(), new_type_name_column }));
const FunctionPtr & function = FunctionFactory::instance().get("CAST", context);
out_expression->add(ExpressionAction::applyFunction(
function, Names{column.name, new_type_name_column}), out_names);
out_expression->add(ExpressionAction::removeColumn(new_type_name_column));
out_expression->add(ExpressionAction::removeColumn(column.name));
conversions.emplace_back(column.name, out_names.at(0));
}
}
}
if (!conversions.empty())
{
/// Give proper names for temporary columns with conversion results.
NamesWithAliases projection;
projection.reserve(conversions.size());
for (const auto & source_and_expression : conversions)
{
/// Column name for temporary filenames before renaming. NOTE The is unnecessarily tricky.
String original_column_name = source_and_expression.first;
String temporary_column_name = original_column_name + " converting";
projection.emplace_back(source_and_expression.second, temporary_column_name);
/// After conversion, we need to rename temporary files into original.
new_types[source_and_expression.first]->enumerateStreams(
[&](const IDataType::SubstreamPath & substream_path)
{
/// Skip array sizes, because they cannot be modified in ALTER.
if (!substream_path.empty() && substream_path.back().type == IDataType::Substream::ArraySizes)
return;
String original_file_name = IDataType::getFileNameForStream(original_column_name, substream_path);
String temporary_file_name = IDataType::getFileNameForStream(temporary_column_name, substream_path);
out_rename_map[temporary_file_name + ".bin"] = original_file_name + ".bin";
out_rename_map[temporary_file_name + ".mrk"] = original_file_name + ".mrk";
}, {});
}
out_expression->add(ExpressionAction::project(projection));
}
if (part && !out_rename_map.empty())
{
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WriteBufferFromOwnString out;
out << "Will rename ";
bool first = true;
for (const auto & from_to : out_rename_map)
{
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if (!first)
out << ", ";
first = false;
out << from_to.first << " to " << from_to.second;
}
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out << " in part " << part->name;
LOG_DEBUG(log, out.str());
}
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}
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MergeTreeData::AlterDataPartTransactionPtr MergeTreeData::alterDataPart(
const DataPartPtr & part,
const NamesAndTypesList & new_columns,
const ASTPtr & new_primary_key,
bool skip_sanity_checks)
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{
ExpressionActionsPtr expression;
AlterDataPartTransactionPtr transaction(new AlterDataPartTransaction(part)); /// Blocks changes to the part.
bool force_update_metadata;
createConvertExpression(part, part->columns, new_columns, expression, transaction->rename_map, force_update_metadata);
size_t num_files_to_modify = transaction->rename_map.size();
size_t num_files_to_remove = 0;
for (const auto & from_to : transaction->rename_map)
if (from_to.second.empty())
++num_files_to_remove;
if (!skip_sanity_checks
&& (num_files_to_modify > settings.max_files_to_modify_in_alter_columns
|| num_files_to_remove > settings.max_files_to_remove_in_alter_columns))
{
transaction->clear();
const bool forbidden_because_of_modify = num_files_to_modify > settings.max_files_to_modify_in_alter_columns;
std::stringstream exception_message;
exception_message
<< "Suspiciously many ("
<< (forbidden_because_of_modify ? num_files_to_modify : num_files_to_remove)
<< ") files (";
bool first = true;
for (const auto & from_to : transaction->rename_map)
{
if (!first)
exception_message << ", ";
if (forbidden_because_of_modify)
{
exception_message << "from `" << from_to.first << "' to `" << from_to.second << "'";
first = false;
}
else if (from_to.second.empty())
{
exception_message << "`" << from_to.first << "'";
first = false;
}
}
exception_message
<< ") need to be "
<< (forbidden_because_of_modify ? "modified" : "removed")
<< " in part " << part->name << " of table at " << full_path << ". Aborting just in case."
<< " If it is not an error, you could increase merge_tree/"
<< (forbidden_because_of_modify ? "max_files_to_modify_in_alter_columns" : "max_files_to_remove_in_alter_columns")
<< " parameter in configuration file (current value: "
<< (forbidden_because_of_modify ? settings.max_files_to_modify_in_alter_columns : settings.max_files_to_remove_in_alter_columns)
<< ")";
throw Exception(exception_message.str(), ErrorCodes::TABLE_DIFFERS_TOO_MUCH);
}
DataPart::Checksums add_checksums;
/// Update primary key if needed.
size_t new_primary_key_file_size{};
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MergeTreeDataPartChecksum::uint128 new_primary_key_hash{};
if (new_primary_key.get() != primary_expr_ast.get())
{
ExpressionActionsPtr new_primary_expr = ExpressionAnalyzer(new_primary_key, context, nullptr, new_columns).getActions(true);
Block new_primary_key_sample = new_primary_expr->getSampleBlock();
size_t new_key_size = new_primary_key_sample.columns();
Columns new_index(new_key_size);
/// Copy the existing primary key columns. Fill new columns with default values.
/// NOTE default expressions are not supported.
ssize_t prev_position_of_existing_column = -1;
for (size_t i = 0; i < new_key_size; ++i)
{
const String & column_name = new_primary_key_sample.safeGetByPosition(i).name;
if (primary_key_sample.has(column_name))
{
ssize_t position_of_existing_column = primary_key_sample.getPositionByName(column_name);
if (position_of_existing_column < prev_position_of_existing_column)
throw Exception("Permuting of columns of primary key is not supported", ErrorCodes::BAD_ARGUMENTS);
new_index[i] = part->index.at(position_of_existing_column);
prev_position_of_existing_column = position_of_existing_column;
}
else
{
const IDataType & type = *new_primary_key_sample.safeGetByPosition(i).type;
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new_index[i] = type.createColumnConstWithDefaultValue(part->marks_count)->convertToFullColumnIfConst();
}
}
if (prev_position_of_existing_column == -1)
throw Exception("No common columns while modifying primary key", ErrorCodes::BAD_ARGUMENTS);
String index_tmp_path = full_path + part->name + "/primary.idx.tmp";
WriteBufferFromFile index_file(index_tmp_path);
HashingWriteBuffer index_stream(index_file);
for (size_t i = 0, marks_count = part->marks_count; i < marks_count; ++i)
for (size_t j = 0; j < new_key_size; ++j)
new_primary_key_sample.getByPosition(j).type->serializeBinary(*new_index[j].get(), i, index_stream);
transaction->rename_map["primary.idx.tmp"] = "primary.idx";
index_stream.next();
new_primary_key_file_size = index_stream.count();
new_primary_key_hash = index_stream.getHash();
}
if (transaction->rename_map.empty() && !force_update_metadata)
{
transaction->clear();
return nullptr;
}
/// Apply the expression and write the result to temporary files.
if (expression)
{
MarkRanges ranges{MarkRange(0, part->marks_count)};
BlockInputStreamPtr part_in = std::make_shared<MergeTreeBlockInputStream>(
*this, part, DEFAULT_MERGE_BLOCK_SIZE, 0, 0, expression->getRequiredColumns(), ranges,
false, nullptr, "", false, 0, DBMS_DEFAULT_BUFFER_SIZE, false);
auto compression_settings = this->context.chooseCompressionSettings(
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part->size_in_bytes,
static_cast<double>(part->size_in_bytes) / this->getTotalActiveSizeInBytes());
ExpressionBlockInputStream in(part_in, expression);
/** Don't write offsets for arrays, because ALTER never change them
* (MODIFY COLUMN could only change types of elements but never modify array sizes).
* Also note that they does not participate in 'rename_map'.
* Also note, that for columns, that are parts of Nested,
* temporary column name ('converting_column_name') created in 'createConvertExpression' method
* will have old name of shared offsets for arrays.
*/
MergedColumnOnlyOutputStream out(*this, full_path + part->name + '/', true /* sync */, compression_settings, true /* skip_offsets */);
in.readPrefix();
out.writePrefix();
while (Block b = in.read())
out.write(b);
in.readSuffix();
add_checksums = out.writeSuffixAndGetChecksums();
}
/// Update the checksums.
DataPart::Checksums new_checksums = part->checksums;
for (auto it : transaction->rename_map)
{
if (it.second.empty())
new_checksums.files.erase(it.first);
else
new_checksums.files[it.second] = add_checksums.files[it.first];
}
if (new_primary_key_file_size)
{
new_checksums.files["primary.idx"].file_size = new_primary_key_file_size;
new_checksums.files["primary.idx"].file_hash = new_primary_key_hash;
}
/// Write the checksums to the temporary file.
if (!part->checksums.empty())
{
transaction->new_checksums = new_checksums;
WriteBufferFromFile checksums_file(full_path + part->name + "/checksums.txt.tmp", 4096);
new_checksums.write(checksums_file);
transaction->rename_map["checksums.txt.tmp"] = "checksums.txt";
}
/// Write the new column list to the temporary file.
{
transaction->new_columns = new_columns.filter(part->columns.getNames());
WriteBufferFromFile columns_file(full_path + part->name + "/columns.txt.tmp", 4096);
transaction->new_columns.writeText(columns_file);
transaction->rename_map["columns.txt.tmp"] = "columns.txt";
}
return transaction;
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}
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void MergeTreeData::AlterDataPartTransaction::commit()
{
if (!data_part)
return;
try
{
std::unique_lock<std::shared_mutex> lock(data_part->columns_lock);
String path = data_part->storage.full_path + data_part->name + "/";
/// NOTE: checking that a file exists before renaming or deleting it
/// is justified by the fact that, when converting an ordinary column
/// to a nullable column, new files are created which did not exist
/// before, i.e. they do not have older versions.
/// 1) Rename the old files.
for (const auto & from_to : rename_map)
{
String name = from_to.second.empty() ? from_to.first : from_to.second;
Poco::File file{path + name};
if (file.exists())
file.renameTo(path + name + ".tmp2");
}
/// 2) Move new files in the place of old and update the metadata in memory.
for (const auto & from_to : rename_map)
{
if (!from_to.second.empty())
Poco::File{path + from_to.first}.renameTo(path + from_to.second);
}
auto & mutable_part = const_cast<DataPart &>(*data_part);
mutable_part.checksums = new_checksums;
mutable_part.columns = new_columns;
/// 3) Delete the old files.
for (const auto & from_to : rename_map)
{
String name = from_to.second.empty() ? from_to.first : from_to.second;
Poco::File file{path + name + ".tmp2"};
if (file.exists())
file.remove();
}
mutable_part.size_in_bytes = MergeTreeData::DataPart::calculateTotalSize(path);
/// TODO: we can skip resetting caches when the column is added.
data_part->storage.context.dropCaches();
clear();
}
catch (...)
{
/// Don't delete temporary files in the destructor in case something went wrong.
clear();
throw;
}
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}
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MergeTreeData::AlterDataPartTransaction::~AlterDataPartTransaction()
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{
try
{
if (!data_part)
return;
LOG_WARNING(data_part->storage.log, "Aborting ALTER of part " << data_part->relative_path);
String path = data_part->getFullPath();
for (const auto & from_to : rename_map)
{
if (!from_to.second.empty())
{
try
{
Poco::File file(path + from_to.first);
if (file.exists())
file.remove();
}
catch (Poco::Exception & e)
{
LOG_WARNING(data_part->storage.log, "Can't remove " << path + from_to.first << ": " << e.displayText());
}
}
}
}
catch (...)
{
tryLogCurrentException(__PRETTY_FUNCTION__);
}
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}
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void MergeTreeData::renameTempPartAndAdd(MutableDataPartPtr & part, SimpleIncrement * increment, Transaction * out_transaction)
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{
auto removed = renameTempPartAndReplace(part, increment, out_transaction);
if (!removed.empty())
throw Exception("Added part " + part->name + " covers " + toString(removed.size())
+ " existing part(s) (including " + removed[0]->name + ")", ErrorCodes::LOGICAL_ERROR);
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}
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MergeTreeData::DataPartsVector MergeTreeData::renameTempPartAndReplace(
MutableDataPartPtr & part, SimpleIncrement * increment, Transaction * out_transaction)
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{
if (out_transaction && out_transaction->data)
throw Exception("Using the same MergeTreeData::Transaction for overlapping transactions is invalid", ErrorCodes::LOGICAL_ERROR);
part->assertState({DataPartState::Temporary});
MergeTreePartInfo part_info = part->info;
String part_name;
DataPartsVector replaced_parts;
std::vector<DataPartIteratorByStateAndName> replaced_iterators;
{
std::unique_lock<std::mutex> lock(data_parts_mutex);
if (DataPartPtr existing_part_in_partition = getAnyPartInPartition(part->info.partition_id, lock))
{
if (part->partition.value != existing_part_in_partition->partition.value)
throw Exception(
"Partition value mismatch between two parts with the same partition ID. Existing part: "
+ existing_part_in_partition->name + ", newly added part: " + part->name,
ErrorCodes::CORRUPTED_DATA);
}
/** It is important that obtaining new block number and adding that block to parts set is done atomically.
* Otherwise there is race condition - merge of blocks could happen in interval that doesn't yet contain new part.
*/
if (increment)
part_info.min_block = part_info.max_block = increment->get();
if (format_version < MERGE_TREE_DATA_MIN_FORMAT_VERSION_WITH_CUSTOM_PARTITIONING)
part_name = part_info.getPartNameV0(part->getMinDate(), part->getMaxDate());
else
part_name = part_info.getPartName();
LOG_TRACE(log, "Renaming temporary part " << part->relative_path << " to " << part_name << ".");
auto it_duplicate = data_parts_by_name.find(part_info);
if (it_duplicate != data_parts_by_name.end())
{
String message = "Part " + (*it_duplicate)->getNameWithState() + " already exists";
if ((*it_duplicate)->checkState({DataPartState::Outdated, DataPartState::Deleting}))
{
throw Exception(message + ", but it will be deleted soon", ErrorCodes::PART_IS_TEMPORARILY_LOCKED);
}
throw Exception(message, ErrorCodes::DUPLICATE_DATA_PART);
}
/// Check that part is not covered and doesn't cover other in-progress parts, it makes sense only for Replicated* engines
if (out_transaction)
{
auto check_coverage = [&part_info, &part_name] (const DataPartPtr & part)
{
if (part_info.contains(part->info))
throw Exception("Cannot add part " + part_name + " covering pre-committed part " + part->name, ErrorCodes::PART_IS_TEMPORARILY_LOCKED);
else if (part->info.contains(part_info))
throw Exception("Cannot add part " + part_name + " covered by pre-committed part " + part->name, ErrorCodes::PART_IS_TEMPORARILY_LOCKED);
};
auto it_middle = data_parts_by_state_and_name.lower_bound(DataPartStateAndInfo(DataPartState::PreCommitted, part_info));
auto precommitted_parts_range = getDataPartsStateRange(DataPartState::PreCommitted);
for (auto it = it_middle; it != precommitted_parts_range.begin();)
{
--it;
check_coverage(*it);
}
for (auto it = it_middle; it != precommitted_parts_range.end();)
{
check_coverage(*it);
++it;
}
}
/// Is the part covered by some other part?
DataPartPtr covering_part;
auto it_middle = data_parts_by_state_and_name.lower_bound(DataPartStateAndInfo(DataPartState::Committed, part_info));
/// Parts contained in the part are consecutive in data_parts, intersecting the insertion place for the part itself.
auto committed_parts_range = getDataPartsStateRange(DataPartState::Committed);
/// Go to the left.
for (auto it = it_middle; it != committed_parts_range.begin();)
{
--it;
if (!part_info.contains((*it)->info))
{
if ((*it)->info.contains(part_info))
covering_part = *it;
break;
}
replaced_iterators.push_back(it);
}
/// Parts must be in ascending order.
std::reverse(replaced_iterators.begin(), replaced_iterators.end());
/// Go to the right.
for (auto it = it_middle; it != committed_parts_range.end();)
{
if ((*it)->name == part_name)
throw Exception("Unexpected duplicate part " + (*it)->getNameWithState() + ". It is a bug.", ErrorCodes::LOGICAL_ERROR);
if (!part_info.contains((*it)->info))
{
if ((*it)->info.contains(part_info))
covering_part = *it;
break;
}
replaced_iterators.push_back(it);
++it;
}
if (covering_part)
{
LOG_WARNING(log, "Tried to add obsolete part " << part_name << " covered by " << covering_part->getNameWithState());
/// It is a temporary part, we want to delete it from filesystem immediately
/// Other fields remain the same
part->remove_time = time(nullptr);
part->is_temp = true;
/// Nothing to commit or rollback
if (out_transaction)
{
out_transaction->data = this;
out_transaction->parts_to_add_on_rollback = {};
out_transaction->parts_to_remove_on_rollback = {};
}
/// We replaced nothing
return {};
}
/// All checks are passed. Now we can rename the part on disk.
/// So, we maintain invariant: if a non-temporary part in filesystem then it is in data_parts
///
/// Ordinary MergeTree engines (they don't use out_transaction) commit parts immediately,
/// whereas ReplicatedMergeTree uses intermediate PreCommitted state
part->name = part_name;
part->info = part_info;
part->is_temp = false;
part->state = (out_transaction) ? DataPartState::PreCommitted : DataPartState::Committed;
part->renameTo(part_name);
data_parts_indexes.insert(part);
replaced_parts.reserve(replaced_iterators.size());
for (auto it_replacing_part : replaced_iterators)
replaced_parts.emplace_back(*it_replacing_part);
if (!out_transaction)
{
addPartContributionToColumnSizes(part);
auto current_time = time(nullptr);
for (auto it_replacing_part : replaced_iterators)
{
(*it_replacing_part)->remove_time = current_time;
modifyPartState(it_replacing_part, DataPartState::Outdated);
removePartContributionToColumnSizes(*it_replacing_part);
}
}
else
{
out_transaction->data = this;
out_transaction->parts_to_add_on_rollback = replaced_parts;
out_transaction->parts_to_remove_on_rollback = {part};
}
}
return replaced_parts;
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}
void MergeTreeData::removePartsFromWorkingSet(const DataPartsVector & remove, bool clear_without_timeout)
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{
std::lock_guard<std::mutex> lock(data_parts_mutex);
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for (auto & part : remove)
{
if (!data_parts_by_name.count(part->info))
throw Exception("Part " + part->getNameWithState() + " not found in data_parts", ErrorCodes::LOGICAL_ERROR);
part->assertState({DataPartState::PreCommitted, DataPartState::Committed, DataPartState::Outdated});
}
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auto remove_time = clear_without_timeout ? 0 : time(nullptr);
for (const DataPartPtr & part : remove)
{
if (part->state == DataPartState::Committed)
removePartContributionToColumnSizes(part);
modifyPartState(part, DataPartState::Outdated);
part->remove_time = remove_time;
}
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}
void MergeTreeData::renameAndDetachPart(const DataPartPtr & part_to_detach, const String & prefix, bool restore_covered,
bool move_to_detached)
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{
LOG_INFO(log, "Renaming " << part_to_detach->relative_path << " to " << prefix << part_to_detach->name << " and detaching it.");
std::lock_guard<std::mutex> lock(data_parts_mutex);
auto it_part = data_parts_by_name.find(part_to_detach->info);
if (it_part == data_parts_by_name.end())
throw Exception("No such data part " + part_to_detach->getNameWithState(), ErrorCodes::NO_SUCH_DATA_PART);
/// What if part_to_detach is reference to *it_part? Make a new owner just in case.
DataPartPtr part = *it_part;
if (part->state == DataPartState::Committed)
removePartContributionToColumnSizes(part);
modifyPartState(it_part, DataPartState::Deleting);
if (move_to_detached || !prefix.empty())
part->renameAddPrefix(move_to_detached, prefix);
data_parts_indexes.erase(it_part);
if (restore_covered && part->info.level == 0)
{
LOG_WARNING(log, "Will not recover parts covered by zero-level part " << part->name);
return;
}
if (restore_covered)
{
Strings restored;
bool error = false;
String error_parts;
Int64 pos = part->info.min_block;
auto is_appropriate_state = [] (DataPartState state)
{
return state == DataPartState::Committed || state == DataPartState::Outdated;
};
auto update_error = [&] (DataPartIteratorByAndName it)
{
error = true;
error_parts += (*it)->getNameWithState() + " ";
};
auto it_middle = data_parts_by_name.lower_bound(part->info);
/// Restore the leftmost part covered by the part
if (it_middle != data_parts_by_name.begin())
{
auto it = std::prev(it_middle);
if (part->contains(**it) && is_appropriate_state((*it)->state))
{
/// Maybe, we must consider part level somehow
if ((*it)->info.min_block != part->info.min_block)
update_error(it);
if ((*it)->state != DataPartState::Committed)
{
addPartContributionToColumnSizes(*it);
modifyPartState(it, DataPartState::Committed); // iterator is not invalidated here
}
pos = (*it)->info.max_block + 1;
restored.push_back((*it)->name);
}
else
update_error(it);
}
else
error = true;
/// Restore "right" parts
for (auto it = it_middle; it != data_parts_by_name.end() && part->contains(**it); ++it)
{
if ((*it)->info.min_block < pos)
continue;
if (!is_appropriate_state((*it)->state))
{
update_error(it);
continue;
}
if ((*it)->info.min_block > pos)
update_error(it);
if ((*it)->state != DataPartState::Committed)
{
addPartContributionToColumnSizes(*it);
modifyPartState(it, DataPartState::Committed);
}
pos = (*it)->info.max_block + 1;
restored.push_back((*it)->name);
}
if (pos != part->info.max_block + 1)
error = true;
for (const String & name : restored)
{
LOG_INFO(log, "Activated part " << name);
}
if (error)
{
LOG_ERROR(log, "The set of parts restored in place of " << part->name << " looks incomplete."
<< " There might or might not be a data loss."
<< (error_parts.empty() ? "" : " Suspicious parts: " + error_parts));
}
}
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}
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size_t MergeTreeData::getTotalActiveSizeInBytes() const
{
size_t res = 0;
{
std::lock_guard<std::mutex> lock(data_parts_mutex);
for (auto & part : getDataPartsStateRange(DataPartState::Committed))
res += part->size_in_bytes;
}
return res;
}
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size_t MergeTreeData::getMaxPartsCountForPartition() const
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{
std::lock_guard<std::mutex> lock(data_parts_mutex);
size_t res = 0;
size_t cur_count = 0;
const String * cur_partition_id = nullptr;
for (const auto & part : getDataPartsStateRange(DataPartState::Committed))
{
if (cur_partition_id && part->info.partition_id == *cur_partition_id)
{
++cur_count;
}
else
{
cur_partition_id = &part->info.partition_id;
cur_count = 1;
}
res = std::max(res, cur_count);
}
return res;
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}
void MergeTreeData::delayInsertIfNeeded(Poco::Event * until)
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{
const size_t parts_count = getMaxPartsCountForPartition();
if (parts_count < settings.parts_to_delay_insert)
return;
if (parts_count >= settings.parts_to_throw_insert)
{
ProfileEvents::increment(ProfileEvents::RejectedInserts);
throw Exception("Too many parts (" + toString(parts_count) + "). Merges are processing significantly slower than inserts.", ErrorCodes::TOO_MUCH_PARTS);
}
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const size_t max_k = settings.parts_to_throw_insert - settings.parts_to_delay_insert; /// always > 0
const size_t k = 1 + parts_count - settings.parts_to_delay_insert; /// from 1 to max_k
const double delay_milliseconds = ::pow(settings.max_delay_to_insert * 1000, static_cast<double>(k) / max_k);
ProfileEvents::increment(ProfileEvents::DelayedInserts);
ProfileEvents::increment(ProfileEvents::DelayedInsertsMilliseconds, delay_milliseconds);
CurrentMetrics::Increment metric_increment(CurrentMetrics::DelayedInserts);
LOG_INFO(log, "Delaying inserting block by "
<< std::fixed << std::setprecision(4) << delay_milliseconds << " ms. because there are " << parts_count << " parts");
if (until)
until->tryWait(delay_milliseconds);
else
std::this_thread::sleep_for(std::chrono::milliseconds(static_cast<size_t>(delay_milliseconds)));
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}
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MergeTreeData::DataPartPtr MergeTreeData::getActiveContainingPart(const String & part_name)
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{
auto part_info = MergeTreePartInfo::fromPartName(part_name, format_version);
std::lock_guard<std::mutex> lock(data_parts_mutex);
auto committed_parts_range = getDataPartsStateRange(DataPartState::Committed);
/// The part can be covered only by the previous or the next one in data_parts.
auto it = data_parts_by_state_and_name.lower_bound(DataPartStateAndInfo(DataPartState::Committed, part_info));
if (it != committed_parts_range.end())
{
if ((*it)->name == part_name)
return *it;
if ((*it)->info.contains(part_info))
return *it;
}
if (it != committed_parts_range.begin())
{
--it;
if ((*it)->info.contains(part_info))
return *it;
}
return nullptr;
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}
MergeTreeData::DataPartPtr MergeTreeData::getPartIfExists(const String & part_name, const MergeTreeData::DataPartStates & valid_states)
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{
auto part_info = MergeTreePartInfo::fromPartName(part_name, format_version);
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std::lock_guard<std::mutex> lock(data_parts_mutex);
auto it = data_parts_by_name.find(part_info);
if (it == data_parts_by_name.end())
return nullptr;
for (auto state : valid_states)
{
if ((*it)->state == state)
return *it;
}
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return nullptr;
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}
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MergeTreeData::MutableDataPartPtr MergeTreeData::loadPartAndFixMetadata(const String & relative_path)
{
MutableDataPartPtr part = std::make_shared<DataPart>(*this, Poco::Path(relative_path).getFileName());
part->relative_path = relative_path;
String full_part_path = part->getFullPath();
/// Earlier the list of columns was written incorrectly. Delete it and re-create.
if (Poco::File(full_part_path + "columns.txt").exists())
Poco::File(full_part_path + "columns.txt").remove();
part->loadColumnsChecksumsIndexes(false, true);
part->modification_time = Poco::File(full_part_path).getLastModified().epochTime();
/// If the checksums file is not present, calculate the checksums and write them to disk.
/// Check the data while we are at it.
if (part->checksums.empty())
{
part->checksums = checkDataPart(full_part_path, index_granularity, false, primary_key_data_types);
{
WriteBufferFromFile out(full_part_path + "checksums.txt.tmp", 4096);
part->checksums.write(out);
}
Poco::File(full_part_path + "checksums.txt.tmp").renameTo(full_part_path + "checksums.txt");
}
return part;
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}
void MergeTreeData::calculateColumnSizesImpl()
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{
column_sizes.clear();
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/// Take into account only committed parts
auto committed_parts_range = getDataPartsStateRange(DataPartState::Committed);
for (const auto & part : committed_parts_range)
addPartContributionToColumnSizes(part);
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}
void MergeTreeData::addPartContributionToColumnSizes(const DataPartPtr & part)
{
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std::shared_lock<std::shared_mutex> lock(part->columns_lock);
const auto & files = part->checksums.files;
/// TODO This method doesn't take into account columns with multiple files.
for (const auto & column : getColumnsList())
{
const auto escaped_name = escapeForFileName(column.name);
const auto bin_file_name = escaped_name + ".bin";
const auto mrk_file_name = escaped_name + ".mrk";
ColumnSize & column_size = column_sizes[column.name];
if (files.count(bin_file_name))
{
const auto & bin_file_checksums = files.at(bin_file_name);
column_size.data_compressed += bin_file_checksums.file_size;
column_size.data_uncompressed += bin_file_checksums.uncompressed_size;
}
if (files.count(mrk_file_name))
column_size.marks += files.at(mrk_file_name).file_size;
}
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}
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static inline void logSubtract(size_t & from, size_t value, Logger * log, const String & variable)
{
if (value > from)
LOG_ERROR(log, "Possibly incorrect subtraction: " << from << " - " << value << " = " << from - value << ", variable " << variable);
from -= value;
}
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void MergeTreeData::removePartContributionToColumnSizes(const DataPartPtr & part)
{
const auto & files = part->checksums.files;
/// TODO This method doesn't take into account columns with multiple files.
for (const auto & column : columns)
{
const auto escaped_name = escapeForFileName(column.name);
const auto bin_file_name = escaped_name + ".bin";
const auto mrk_file_name = escaped_name + ".mrk";
auto & column_size = column_sizes[column.name];
if (files.count(bin_file_name))
{
const auto & bin_file_checksums = files.at(bin_file_name);
logSubtract(column_size.data_compressed, bin_file_checksums.file_size, log, bin_file_name + ".file_size");
logSubtract(column_size.data_uncompressed, bin_file_checksums.uncompressed_size, log, bin_file_name + ".uncompressed_size");
}
if (files.count(mrk_file_name))
logSubtract(column_size.marks, files.at(mrk_file_name).file_size, log, mrk_file_name + ".file_size");
}
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}
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void MergeTreeData::freezePartition(const ASTPtr & partition_ast, const String & with_name, const Context & context)
{
std::optional<String> prefix;
String partition_id;
if (format_version < MERGE_TREE_DATA_MIN_FORMAT_VERSION_WITH_CUSTOM_PARTITIONING)
{
const auto & partition = dynamic_cast<const ASTPartition &>(*partition_ast);
/// Month-partitioning specific - partition value can represent a prefix of the partition to freeze.
if (const auto * partition_lit = dynamic_cast<const ASTLiteral *>(partition.value.get()))
prefix = partition_lit->value.getType() == Field::Types::UInt64
? toString(partition_lit->value.get<UInt64>())
: partition_lit->value.safeGet<String>();
else
partition_id = getPartitionIDFromQuery(partition_ast, context);
}
else
partition_id = getPartitionIDFromQuery(partition_ast, context);
if (prefix)
LOG_DEBUG(log, "Freezing parts with prefix " + *prefix);
else
LOG_DEBUG(log, "Freezing parts with partition ID " + partition_id);
String clickhouse_path = Poco::Path(context.getPath()).makeAbsolute().toString();
String shadow_path = clickhouse_path + "shadow/";
Poco::File(shadow_path).createDirectories();
String backup_path = shadow_path
+ (!with_name.empty()
? escapeForFileName(with_name)
: toString(Increment(shadow_path + "increment.txt").get(true)))
+ "/";
LOG_DEBUG(log, "Snapshot will be placed at " + backup_path);
/// Acquire a snapshot of active data parts to prevent removing while doing backup.
const auto data_parts = getDataParts();
size_t parts_processed = 0;
for (const auto & part : data_parts)
{
if (prefix)
{
if (!startsWith(part->info.partition_id, *prefix))
continue;
}
else if (part->info.partition_id != partition_id)
continue;
LOG_DEBUG(log, "Freezing part " << part->name);
String part_absolute_path = Poco::Path(part->getFullPath()).absolute().toString();
if (!startsWith(part_absolute_path, clickhouse_path))
throw Exception("Part path " + part_absolute_path + " is not inside " + clickhouse_path, ErrorCodes::LOGICAL_ERROR);
String backup_part_absolute_path = part_absolute_path;
backup_part_absolute_path.replace(0, clickhouse_path.size(), backup_path);
localBackup(part_absolute_path, backup_part_absolute_path);
++parts_processed;
}
LOG_DEBUG(log, "Freezed " << parts_processed << " parts");
}
size_t MergeTreeData::getPartitionSize(const std::string & partition_id) const
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{
size_t size = 0;
Poco::DirectoryIterator end;
for (Poco::DirectoryIterator it(full_path); it != end; ++it)
{
MergeTreePartInfo part_info;
if (!MergeTreePartInfo::tryParsePartName(it.name(), &part_info, format_version))
continue;
if (part_info.partition_id != partition_id)
continue;
const auto part_path = it.path().absolute().toString();
for (Poco::DirectoryIterator it2(part_path); it2 != end; ++it2)
{
const auto part_file_path = it2.path().absolute().toString();
size += Poco::File(part_file_path).getSize();
}
}
return size;
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}
String MergeTreeData::getPartitionIDFromQuery(const ASTPtr & ast, const Context & context)
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{
const auto & partition_ast = typeid_cast<const ASTPartition &>(*ast);
if (!partition_ast.value)
return partition_ast.id;
if (format_version < MERGE_TREE_DATA_MIN_FORMAT_VERSION_WITH_CUSTOM_PARTITIONING)
{
/// Month-partitioning specific - partition ID can be passed in the partition value.
const auto * partition_lit = typeid_cast<const ASTLiteral *>(partition_ast.value.get());
if (partition_lit && partition_lit->value.getType() == Field::Types::String)
{
String partition_id = partition_lit->value.get<String>();
if (partition_id.size() != 6 || !std::all_of(partition_id.begin(), partition_id.end(), isNumericASCII))
throw Exception(
"Invalid partition format: " + partition_id + ". Partition should consist of 6 digits: YYYYMM",
ErrorCodes::INVALID_PARTITION_VALUE);
return partition_id;
}
}
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/// Re-parse partition key fields using the information about expected field types.
size_t fields_count = partition_expr_column_types.size();
if (partition_ast.fields_count != fields_count)
throw Exception(
"Wrong number of fields in the partition expression: " + toString(partition_ast.fields_count) +
", must be: " + toString(fields_count),
ErrorCodes::INVALID_PARTITION_VALUE);
Row partition_row(fields_count);
if (fields_count)
{
ReadBufferFromMemory left_paren_buf("(", 1);
ReadBufferFromMemory fields_buf(partition_ast.fields_str.data, partition_ast.fields_str.size);
ReadBufferFromMemory right_paren_buf(")", 1);
ConcatReadBuffer buf({&left_paren_buf, &fields_buf, &right_paren_buf});
Block header;
for (size_t i = 0; i < fields_count; ++i)
header.insert(ColumnWithTypeAndName(partition_expr_column_types[i], partition_expr_columns[i]));
ValuesRowInputStream input_stream(buf, header, context, /* interpret_expressions = */true);
MutableColumns columns = header.cloneEmptyColumns();
if (!input_stream.read(columns))
throw Exception(
"Could not parse partition value: `" + partition_ast.fields_str.toString() + "`",
ErrorCodes::INVALID_PARTITION_VALUE);
for (size_t i = 0; i < fields_count; ++i)
columns[i]->get(0, partition_row[i]);
}
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MergeTreePartition partition(std::move(partition_row));
String partition_id = partition.getID(*this);
{
std::unique_lock<std::mutex> data_parts_lock(data_parts_mutex);
DataPartPtr existing_part_in_partition = getAnyPartInPartition(partition_id, data_parts_lock);
if (existing_part_in_partition && existing_part_in_partition->partition.value != partition.value)
{
WriteBufferFromOwnString buf;
writeCString("Parsed partition value: ", buf);
partition.serializeTextQuoted(*this, buf);
writeCString(" doesn't match partition value for an existing part with the same partition ID: ", buf);
writeString(existing_part_in_partition->name, buf);
throw Exception(buf.str(), ErrorCodes::INVALID_PARTITION_VALUE);
}
}
return partition_id;
}
MergeTreeData::DataPartsVector MergeTreeData::getDataPartsVector(const DataPartStates & affordable_states, DataPartStateVector * out_states) const
{
DataPartsVector res;
DataPartsVector buf;
{
std::lock_guard<std::mutex> lock(data_parts_mutex);
for (auto state : affordable_states)
{
buf = std::move(res);
res.clear();
auto range = getDataPartsStateRange(state);
std::merge(range.begin(), range.end(), buf.begin(), buf.end(), std::back_inserter(res), LessDataPart());
}
if (out_states != nullptr)
{
out_states->resize(res.size());
for (size_t i = 0; i < res.size(); ++i)
(*out_states)[i] = res[i]->state;
}
}
return res;
}
MergeTreeData::DataPartsVector MergeTreeData::getAllDataPartsVector(MergeTreeData::DataPartStateVector * out_states) const
{
DataPartsVector res;
{
std::lock_guard<std::mutex> lock(data_parts_mutex);
res.assign(data_parts_by_name.begin(), data_parts_by_name.end());
if (out_states != nullptr)
{
out_states->resize(res.size());
for (size_t i = 0; i < res.size(); ++i)
(*out_states)[i] = res[i]->state;
}
}
return res;
}
MergeTreeData::DataParts MergeTreeData::getDataParts(const DataPartStates & affordable_states) const
{
DataParts res;
{
std::lock_guard<std::mutex> lock(data_parts_mutex);
for (auto state : affordable_states)
{
auto range = getDataPartsStateRange(state);
res.insert(range.begin(), range.end());
}
}
return res;
}
MergeTreeData::DataParts MergeTreeData::getDataParts() const
{
return getDataParts({DataPartState::Committed});
}
MergeTreeData::DataPartsVector MergeTreeData::getDataPartsVector() const
{
return getDataPartsVector({DataPartState::Committed});
}
MergeTreeData::DataPartPtr MergeTreeData::getAnyPartInPartition(
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const String & partition_id, std::unique_lock<std::mutex> & /*data_parts_lock*/)
{
auto min_block = std::numeric_limits<Int64>::min();
MergeTreePartInfo dummy_part_info(partition_id, min_block, min_block, 0);
auto it = data_parts_by_state_and_name.lower_bound(DataPartStateAndInfo(DataPartState::Committed, dummy_part_info));
if (it != data_parts_by_state_and_name.end() && (*it)->state == DataPartState::Committed && (*it)->info.partition_id == partition_id)
return *it;
return nullptr;
}
void MergeTreeData::Transaction::rollback()
{
if (!isEmpty())
{
std::stringstream ss;
if (!parts_to_remove_on_rollback.empty())
{
ss << " Removing parts:";
for (const auto & part : parts_to_remove_on_rollback)
ss << " " << part->relative_path;
ss << ".";
}
if (!parts_to_add_on_rollback.empty())
{
ss << " Adding parts: ";
for (const auto & part : parts_to_add_on_rollback)
ss << " " << part->relative_path;
ss << ".";
}
LOG_DEBUG(data->log, "Undoing transaction." << ss.str());
/// PreCommitted -> Outdated
replaceParts(DataPartState::Outdated, DataPartState::Committed, true);
}
clear();
}
void MergeTreeData::Transaction::commit()
{
if (!isEmpty())
{
/// PreCommitted -> Committed, Committed -> Outdated
replaceParts(DataPartState::Committed, DataPartState::Outdated, false);
}
clear();
}
void MergeTreeData::Transaction::replaceParts(MergeTreeData::DataPartState move_precommitted_to,
MergeTreeData::DataPartState move_committed_to, bool remove_without_delay)
{
auto & committed_parts = parts_to_add_on_rollback;
auto & precommitted_parts = parts_to_remove_on_rollback;
/// TODO: also make sense to activate CleanupThread's cv
auto remove_time = (remove_without_delay) ? 0 : time(nullptr);
{
std::lock_guard<std::mutex> lock(data->data_parts_mutex);
for (auto & part : committed_parts)
part->assertState({DataPartState::Committed});
for (auto & part : precommitted_parts)
part->assertState({DataPartState::PreCommitted});
/// If it is rollback then do nothing, else make it Outdated and remove their size contribution
if (move_committed_to != DataPartState::Committed)
{
for (const DataPartPtr & part : committed_parts)
{
data->modifyPartState(part, move_committed_to);
part->remove_time = remove_time;
data->removePartContributionToColumnSizes(part);
}
}
/// If it is rollback just change state to Outdated, else change state to Committed and add their size contribution
for (auto & part : precommitted_parts)
{
data->modifyPartState(part, move_precommitted_to);
if (move_precommitted_to == DataPartState::Committed)
data->addPartContributionToColumnSizes(part);
else
part->remove_time = remove_time;
}
}
}
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}