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https://github.com/ClickHouse/ClickHouse.git
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Fix
This commit is contained in:
parent
ebfea07f93
commit
1aa8e62bb7
@ -22,15 +22,15 @@ public:
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using Configuration = typename Storage::Configuration;
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using Configuration = typename Storage::Configuration;
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template <class ...Args>
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template <class ...Args>
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explicit IStorageDataLake(const Configuration & configuration_, ContextPtr context_, Args && ...args)
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explicit IStorageDataLake(const Configuration & configuration_, ContextPtr context_, bool attach, Args && ...args)
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: Storage(getConfigurationForDataRead(configuration_, context_), context_, std::forward<Args>(args)...)
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: Storage(getConfigurationForDataRead(configuration_, context_, {}, attach), context_, std::forward<Args>(args)...)
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, base_configuration(configuration_)
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, base_configuration(configuration_)
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, log(&Poco::Logger::get(getName())) {} // NOLINT(clang-analyzer-optin.cplusplus.VirtualCall)
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, log(&Poco::Logger::get(getName())) {} // NOLINT(clang-analyzer-optin.cplusplus.VirtualCall)
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template <class ...Args>
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template <class ...Args>
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static StoragePtr create(const Configuration & configuration_, ContextPtr context_, Args && ...args)
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static StoragePtr create(const Configuration & configuration_, ContextPtr context_, bool attach, Args && ...args)
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{
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{
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return std::make_shared<IStorageDataLake<Storage, Name, MetadataParser>>(configuration_, context_, std::forward<Args>(args)...);
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return std::make_shared<IStorageDataLake<Storage, Name, MetadataParser>>(configuration_, context_, attach, std::forward<Args>(args)...);
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}
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}
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String getName() const override { return name; }
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String getName() const override { return name; }
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@ -64,12 +64,14 @@ public:
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private:
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private:
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static Configuration getConfigurationForDataRead(
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static Configuration getConfigurationForDataRead(
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const Configuration & base_configuration, ContextPtr local_context, const Strings & keys = {})
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const Configuration & base_configuration, ContextPtr local_context, const Strings & keys = {}, bool attach = false)
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{
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{
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auto configuration{base_configuration};
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auto configuration{base_configuration};
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configuration.update(local_context);
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configuration.update(local_context);
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configuration.static_configuration = true;
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configuration.static_configuration = true;
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try
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{
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if (keys.empty())
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if (keys.empty())
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configuration.keys = getDataFiles(configuration, local_context);
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configuration.keys = getDataFiles(configuration, local_context);
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else
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else
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@ -83,6 +85,14 @@ private:
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configuration.connect(local_context);
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configuration.connect(local_context);
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return configuration;
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return configuration;
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}
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}
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catch (...)
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{
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if (!attach)
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throw;
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configuration.is_broken = true;
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return configuration;
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}
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}
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static Strings getDataFiles(const Configuration & configuration, ContextPtr local_context)
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static Strings getDataFiles(const Configuration & configuration, ContextPtr local_context)
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{
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{
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@ -94,10 +104,11 @@ private:
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const bool updated = base_configuration.update(local_context);
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const bool updated = base_configuration.update(local_context);
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auto new_keys = getDataFiles(base_configuration, local_context);
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auto new_keys = getDataFiles(base_configuration, local_context);
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if (!updated && new_keys == Storage::getConfiguration().keys)
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if (!updated && !base_configuration.is_broken && new_keys == Storage::getConfiguration().keys)
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return;
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return;
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Storage::useConfiguration(getConfigurationForDataRead(base_configuration, local_context, new_keys));
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Storage::useConfiguration(getConfigurationForDataRead(base_configuration, local_context, new_keys));
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base_configuration.is_broken = false;
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}
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}
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Configuration base_configuration;
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Configuration base_configuration;
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@ -115,7 +126,7 @@ static StoragePtr createDataLakeStorage(const StorageFactory::Arguments & args)
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if (configuration.format == "auto")
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if (configuration.format == "auto")
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configuration.format = "Parquet";
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configuration.format = "Parquet";
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return DataLake::create(configuration, args.getContext(), args.table_id, args.columns, args.constraints,
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return DataLake::create(configuration, args.getContext(), args.attach, args.table_id, args.columns, args.constraints,
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args.comment, getFormatSettings(args.getContext()));
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args.comment, getFormatSettings(args.getContext()));
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}
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}
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@ -8,6 +8,7 @@ namespace DB
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StoragePtr StorageIceberg::create(
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StoragePtr StorageIceberg::create(
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const DB::StorageIceberg::Configuration & base_configuration,
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const DB::StorageIceberg::Configuration & base_configuration,
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DB::ContextPtr context_,
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DB::ContextPtr context_,
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bool attach,
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const DB::StorageID & table_id_,
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const DB::StorageID & table_id_,
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const DB::ColumnsDescription & columns_,
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const DB::ColumnsDescription & columns_,
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const DB::ConstraintsDescription & constraints_,
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const DB::ConstraintsDescription & constraints_,
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@ -16,10 +17,30 @@ StoragePtr StorageIceberg::create(
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{
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{
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auto configuration{base_configuration};
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auto configuration{base_configuration};
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configuration.update(context_);
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configuration.update(context_);
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auto metadata = parseIcebergMetadata(configuration, context_);
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std::unique_ptr<IcebergMetadata> metadata;
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auto schema_from_metadata = metadata->getTableSchema();
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NamesAndTypesList schema_from_metadata;
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try
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{
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metadata = parseIcebergMetadata(configuration, context_);
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schema_from_metadata = metadata->getTableSchema();
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configuration.keys = metadata->getDataFiles();
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configuration.keys = metadata->getDataFiles();
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return std::make_shared<StorageIceberg>(std::move(metadata), configuration, context_, table_id_, columns_.empty() ? ColumnsDescription(schema_from_metadata) : columns_, constraints_, comment, format_settings_);
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}
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catch (...)
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{
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if (!attach)
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throw;
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configuration.is_broken = true;
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}
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return std::make_shared<StorageIceberg>(
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std::move(metadata),
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configuration,
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context_,
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table_id_,
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columns_.empty() ? ColumnsDescription(schema_from_metadata) : columns_,
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constraints_,
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comment,
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format_settings_);
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}
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}
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StorageIceberg::StorageIceberg(
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StorageIceberg::StorageIceberg(
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@ -52,8 +73,12 @@ void StorageIceberg::updateConfigurationImpl(ContextPtr local_context)
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{
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{
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const bool updated = base_configuration.update(local_context);
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const bool updated = base_configuration.update(local_context);
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auto new_metadata = parseIcebergMetadata(base_configuration, local_context);
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auto new_metadata = parseIcebergMetadata(base_configuration, local_context);
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if (!current_metadata)
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current_metadata = parseIcebergMetadata(base_configuration, local_context);
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/// Check if nothing was changed.
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/// Check if nothing was changed.
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if (updated && new_metadata->getVersion() == current_metadata->getVersion())
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if (!updated && !base_configuration.is_broken && new_metadata->getVersion() == current_metadata->getVersion())
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return;
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return;
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if (new_metadata->getVersion() != current_metadata->getVersion())
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if (new_metadata->getVersion() != current_metadata->getVersion())
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@ -63,6 +88,7 @@ void StorageIceberg::updateConfigurationImpl(ContextPtr local_context)
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/// If metadata wasn't changed, we won't list data files again.
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/// If metadata wasn't changed, we won't list data files again.
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updated_configuration.keys = current_metadata->getDataFiles();
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updated_configuration.keys = current_metadata->getDataFiles();
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StorageS3::useConfiguration(updated_configuration);
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StorageS3::useConfiguration(updated_configuration);
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base_configuration.is_broken = false;
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}
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}
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}
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}
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@ -30,6 +30,7 @@ public:
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static StoragePtr create(const Configuration & base_configuration,
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static StoragePtr create(const Configuration & base_configuration,
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ContextPtr context_,
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ContextPtr context_,
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bool attach,
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const StorageID & table_id_,
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const StorageID & table_id_,
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const ColumnsDescription & columns_,
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const ColumnsDescription & columns_,
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const ConstraintsDescription & constraints_,
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const ConstraintsDescription & constraints_,
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@ -304,6 +304,7 @@ public:
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std::shared_ptr<const S3::Client> client;
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std::shared_ptr<const S3::Client> client;
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std::vector<String> keys;
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std::vector<String> keys;
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bool is_broken = false;
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};
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};
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StorageS3(
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StorageS3(
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@ -34,7 +34,7 @@ protected:
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columns = parseColumnsListFromString(TableFunction::configuration.structure, context);
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columns = parseColumnsListFromString(TableFunction::configuration.structure, context);
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StoragePtr storage = Storage::create(
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StoragePtr storage = Storage::create(
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TableFunction::configuration, context, StorageID(TableFunction::getDatabaseName(), table_name),
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TableFunction::configuration, context, true, StorageID(TableFunction::getDatabaseName(), table_name),
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columns, ConstraintsDescription{}, String{}, std::nullopt);
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columns, ConstraintsDescription{}, String{}, std::nullopt);
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storage->startup();
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storage->startup();
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@ -36,6 +36,16 @@ def get_file_contents(minio_client, bucket, s3_path):
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return data_str.decode()
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return data_str.decode()
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def list_s3_objects(minio_client, bucket, prefix=""):
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prefix_len = len(prefix)
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return [
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obj.object_name[prefix_len:]
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for obj in minio_client.list_objects(
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bucket, prefix=prefix, recursive=True
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)
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]
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# Creates S3 bucket for tests and allows anonymous read-write access to it.
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# Creates S3 bucket for tests and allows anonymous read-write access to it.
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def prepare_s3_bucket(started_cluster):
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def prepare_s3_bucket(started_cluster):
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# Allows read-write access for bucket without authorization.
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# Allows read-write access for bucket without authorization.
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@ -26,8 +26,14 @@ from pyspark.sql.functions import current_timestamp
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from datetime import datetime
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from datetime import datetime
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from pyspark.sql.functions import monotonically_increasing_id, row_number
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from pyspark.sql.functions import monotonically_increasing_id, row_number
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from pyspark.sql.window import Window
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from pyspark.sql.window import Window
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from minio.deleteobjects import DeleteObject
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from helpers.s3_tools import prepare_s3_bucket, upload_directory, get_file_contents
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from helpers.s3_tools import (
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prepare_s3_bucket,
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upload_directory,
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get_file_contents,
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list_s3_objects,
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)
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SCRIPT_DIR = os.path.dirname(os.path.realpath(__file__))
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SCRIPT_DIR = os.path.dirname(os.path.realpath(__file__))
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@ -55,6 +61,7 @@ def started_cluster():
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main_configs=["configs/config.d/named_collections.xml"],
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main_configs=["configs/config.d/named_collections.xml"],
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user_configs=["configs/users.d/users.xml"],
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user_configs=["configs/users.d/users.xml"],
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with_minio=True,
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with_minio=True,
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stay_alive=True,
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)
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)
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logging.info("Starting cluster...")
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logging.info("Starting cluster...")
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@ -111,12 +118,12 @@ def get_delta_metadata(delta_metadata_file):
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return combined_json
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return combined_json
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def create_delta_table(node, table_name):
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def create_delta_table(node, table_name, bucket="root"):
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node.query(
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node.query(
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f"""
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f"""
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DROP TABLE IF EXISTS {table_name};
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DROP TABLE IF EXISTS {table_name};
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CREATE TABLE {table_name}
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CREATE TABLE {table_name}
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ENGINE=DeltaLake(s3, filename = '{table_name}/')"""
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ENGINE=DeltaLake(s3, filename = '{table_name}/', url = 'http://minio1:9001/{bucket}/')"""
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)
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)
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@ -401,3 +408,50 @@ def test_types(started_cluster):
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["e", "Nullable(Bool)"],
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["e", "Nullable(Bool)"],
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]
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]
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)
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)
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def test_restart_broken(started_cluster):
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instance = started_cluster.instances["node1"]
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spark = started_cluster.spark_session
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minio_client = started_cluster.minio_client
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bucket = "broken"
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TABLE_NAME = "test_restart_broken"
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if not minio_client.bucket_exists(bucket):
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minio_client.make_bucket(bucket)
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parquet_data_path = create_initial_data_file(
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started_cluster,
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instance,
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"SELECT number, toString(number) FROM numbers(100)",
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TABLE_NAME,
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)
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write_delta_from_file(spark, parquet_data_path, f"/{TABLE_NAME}")
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upload_directory(minio_client, bucket, f"/{TABLE_NAME}", "")
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create_delta_table(instance, TABLE_NAME, bucket=bucket)
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assert int(instance.query(f"SELECT count() FROM {TABLE_NAME}")) == 100
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s3_objects = list_s3_objects(minio_client, bucket, prefix="")
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assert (
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len(
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list(
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minio_client.remove_objects(
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bucket,
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[DeleteObject(obj) for obj in s3_objects],
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)
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)
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)
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== 0
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)
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minio_client.remove_bucket(bucket)
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instance.restart_clickhouse()
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assert "NoSuchBucket" in instance.query_and_get_error(f"SELECT count() FROM {TABLE_NAME}")
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minio_client.make_bucket(bucket)
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upload_directory(minio_client, bucket, f"/{TABLE_NAME}", "")
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assert int(instance.query(f"SELECT count() FROM {TABLE_NAME}")) == 100
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@ -27,8 +27,14 @@ from datetime import datetime
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from pyspark.sql.functions import monotonically_increasing_id, row_number
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from pyspark.sql.functions import monotonically_increasing_id, row_number
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from pyspark.sql.window import Window
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from pyspark.sql.window import Window
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from pyspark.sql.readwriter import DataFrameWriter, DataFrameWriterV2
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from pyspark.sql.readwriter import DataFrameWriter, DataFrameWriterV2
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from minio.deleteobjects import DeleteObject
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from helpers.s3_tools import prepare_s3_bucket, upload_directory, get_file_contents
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from helpers.s3_tools import (
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prepare_s3_bucket,
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upload_directory,
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get_file_contents,
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list_s3_objects,
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)
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SCRIPT_DIR = os.path.dirname(os.path.realpath(__file__))
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SCRIPT_DIR = os.path.dirname(os.path.realpath(__file__))
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@ -61,6 +67,7 @@ def started_cluster():
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main_configs=["configs/config.d/named_collections.xml"],
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main_configs=["configs/config.d/named_collections.xml"],
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user_configs=["configs/users.d/users.xml"],
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user_configs=["configs/users.d/users.xml"],
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with_minio=True,
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with_minio=True,
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stay_alive=True,
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)
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)
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logging.info("Starting cluster...")
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logging.info("Starting cluster...")
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@ -135,12 +142,12 @@ def generate_data(spark, start, end):
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return df
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return df
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def create_iceberg_table(node, table_name, format="Parquet"):
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def create_iceberg_table(node, table_name, format="Parquet", bucket="root"):
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node.query(
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node.query(
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f"""
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f"""
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DROP TABLE IF EXISTS {table_name};
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DROP TABLE IF EXISTS {table_name};
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CREATE TABLE {table_name}
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CREATE TABLE {table_name}
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ENGINE=Iceberg(s3, filename = 'iceberg_data/default/{table_name}/', format={format})"""
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ENGINE=Iceberg(s3, filename = 'iceberg_data/default/{table_name}/', format={format}, url = 'http://minio1:9001/{bucket}/')"""
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)
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)
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@ -551,3 +558,54 @@ def test_metadata_file_format_with_uuid(started_cluster, format_version):
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create_iceberg_table(instance, TABLE_NAME)
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create_iceberg_table(instance, TABLE_NAME)
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assert int(instance.query(f"SELECT count() FROM {TABLE_NAME}")) == 500
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assert int(instance.query(f"SELECT count() FROM {TABLE_NAME}")) == 500
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def test_restart_broken(started_cluster):
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instance = started_cluster.instances["node1"]
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spark = started_cluster.spark_session
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minio_client = started_cluster.minio_client
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bucket = "broken"
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TABLE_NAME = "test_restart_broken"
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if not minio_client.bucket_exists(bucket):
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minio_client.make_bucket(bucket)
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parquet_data_path = create_initial_data_file(
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started_cluster,
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instance,
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"SELECT number, toString(number) FROM numbers(100)",
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TABLE_NAME,
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)
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write_iceberg_from_file(spark, parquet_data_path, TABLE_NAME, format_version="1")
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files = upload_directory(
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||||||
|
minio_client, bucket, f"/iceberg_data/default/{TABLE_NAME}/", ""
|
||||||
|
)
|
||||||
|
create_iceberg_table(instance, TABLE_NAME, bucket=bucket)
|
||||||
|
assert int(instance.query(f"SELECT count() FROM {TABLE_NAME}")) == 100
|
||||||
|
|
||||||
|
s3_objects = list_s3_objects(minio_client, bucket, prefix="")
|
||||||
|
assert (
|
||||||
|
len(
|
||||||
|
list(
|
||||||
|
minio_client.remove_objects(
|
||||||
|
bucket,
|
||||||
|
[DeleteObject(obj) for obj in s3_objects],
|
||||||
|
)
|
||||||
|
)
|
||||||
|
)
|
||||||
|
== 0
|
||||||
|
)
|
||||||
|
minio_client.remove_bucket(bucket)
|
||||||
|
|
||||||
|
instance.restart_clickhouse()
|
||||||
|
|
||||||
|
assert "NoSuchBucket" in instance.query_and_get_error(f"SELECT count() FROM {TABLE_NAME}")
|
||||||
|
|
||||||
|
minio_client.make_bucket(bucket)
|
||||||
|
|
||||||
|
files = upload_directory(
|
||||||
|
minio_client, bucket, f"/iceberg_data/default/{TABLE_NAME}/", ""
|
||||||
|
)
|
||||||
|
|
||||||
|
assert int(instance.query(f"SELECT count() FROM {TABLE_NAME}")) == 100
|
||||||
|
Loading…
Reference in New Issue
Block a user