Use SeekableReadBuffer instead of ReadBuffer in IBackupEntry.

This commit is contained in:
Vitaly Baranov 2022-04-18 00:53:45 +02:00
parent f14613f433
commit 3966ee1e30
20 changed files with 377 additions and 33 deletions

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@ -86,7 +86,7 @@ void ArchiveBackup::closeImpl(const Strings &, bool writing_finalized_)
fs::remove(path); fs::remove(path);
} }
std::unique_ptr<ReadBuffer> ArchiveBackup::readFileImpl(const String & file_name) const std::unique_ptr<SeekableReadBuffer> ArchiveBackup::readFileImpl(const String & file_name) const
{ {
/// mutex is already locked /// mutex is already locked
return reader->readFile(file_name); return reader->readFile(file_name);

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@ -37,7 +37,7 @@ private:
void openImpl(OpenMode open_mode_) override; void openImpl(OpenMode open_mode_) override;
void closeImpl(const Strings & written_files_, bool writing_finalized_) override; void closeImpl(const Strings & written_files_, bool writing_finalized_) override;
bool supportsWritingInMultipleThreads() const override { return false; } bool supportsWritingInMultipleThreads() const override { return false; }
std::unique_ptr<ReadBuffer> readFileImpl(const String & file_name) const override; std::unique_ptr<SeekableReadBuffer> readFileImpl(const String & file_name) const override;
std::unique_ptr<WriteBuffer> writeFileImpl(const String & file_name) override; std::unique_ptr<WriteBuffer> writeFileImpl(const String & file_name) override;
const DiskPtr disk; const DiskPtr disk;

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@ -1,5 +1,5 @@
#include <Backups/BackupEntryFromAppendOnlyFile.h> #include <Backups/BackupEntryFromAppendOnlyFile.h>
#include <IO/LimitReadBuffer.h> #include <IO/LimitSeekableReadBuffer.h>
namespace DB namespace DB
@ -26,10 +26,10 @@ BackupEntryFromAppendOnlyFile::BackupEntryFromAppendOnlyFile(
{ {
} }
std::unique_ptr<ReadBuffer> BackupEntryFromAppendOnlyFile::getReadBuffer() const std::unique_ptr<SeekableReadBuffer> BackupEntryFromAppendOnlyFile::getReadBuffer() const
{ {
auto buf = BackupEntryFromImmutableFile::getReadBuffer(); auto buf = BackupEntryFromImmutableFile::getReadBuffer();
return std::make_unique<LimitReadBuffer>(std::move(buf), limit, false); return std::make_unique<LimitSeekableReadBuffer>(std::move(buf), limit);
} }
} }

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@ -26,7 +26,7 @@ public:
const std::shared_ptr<TemporaryFileOnDisk> & temporary_file_ = {}); const std::shared_ptr<TemporaryFileOnDisk> & temporary_file_ = {});
UInt64 getSize() const override { return limit; } UInt64 getSize() const override { return limit; }
std::unique_ptr<ReadBuffer> getReadBuffer() const override; std::unique_ptr<SeekableReadBuffer> getReadBuffer() const override;
private: private:
const UInt64 limit; const UInt64 limit;

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@ -36,7 +36,7 @@ UInt64 BackupEntryFromImmutableFile::getSize() const
return *file_size; return *file_size;
} }
std::unique_ptr<ReadBuffer> BackupEntryFromImmutableFile::getReadBuffer() const std::unique_ptr<SeekableReadBuffer> BackupEntryFromImmutableFile::getReadBuffer() const
{ {
if (disk) if (disk)
return disk->readFile(file_path); return disk->readFile(file_path);

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@ -33,7 +33,7 @@ public:
UInt64 getSize() const override; UInt64 getSize() const override;
std::optional<UInt128> getChecksum() const override { return checksum; } std::optional<UInt128> getChecksum() const override { return checksum; }
std::unique_ptr<ReadBuffer> getReadBuffer() const override; std::unique_ptr<SeekableReadBuffer> getReadBuffer() const override;
String getFilePath() const { return file_path; } String getFilePath() const { return file_path; }
DiskPtr getDisk() const { return disk; } DiskPtr getDisk() const { return disk; }

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@ -15,7 +15,7 @@ BackupEntryFromMemory::BackupEntryFromMemory(String data_, const std::optional<U
{ {
} }
std::unique_ptr<ReadBuffer> BackupEntryFromMemory::getReadBuffer() const std::unique_ptr<SeekableReadBuffer> BackupEntryFromMemory::getReadBuffer() const
{ {
return std::make_unique<ReadBufferFromString>(data); return std::make_unique<ReadBufferFromString>(data);
} }

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@ -17,7 +17,7 @@ public:
UInt64 getSize() const override { return data.size(); } UInt64 getSize() const override { return data.size(); }
std::optional<UInt128> getChecksum() const override { return checksum; } std::optional<UInt128> getChecksum() const override { return checksum; }
std::unique_ptr<ReadBuffer> getReadBuffer() const override; std::unique_ptr<SeekableReadBuffer> getReadBuffer() const override;
private: private:
const String data; const String data;

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@ -5,7 +5,7 @@
#include <Common/StringUtils/StringUtils.h> #include <Common/StringUtils/StringUtils.h>
#include <Common/hex.h> #include <Common/hex.h>
#include <Common/quoteString.h> #include <Common/quoteString.h>
#include <IO/ConcatReadBuffer.h> #include <IO/ConcatSeekableReadBuffer.h>
#include <IO/HashingReadBuffer.h> #include <IO/HashingReadBuffer.h>
#include <IO/ReadBufferFromFileBase.h> #include <IO/ReadBufferFromFileBase.h>
#include <IO/ReadHelpers.h> #include <IO/ReadHelpers.h>
@ -63,13 +63,14 @@ public:
{ {
} }
std::unique_ptr<ReadBuffer> getReadBuffer() const override std::unique_ptr<SeekableReadBuffer> getReadBuffer() const override
{ {
auto read_buffer = backup->readFileImpl(data_file_name); auto read_buffer = backup->readFileImpl(data_file_name);
if (base_backup_entry) if (base_backup_entry)
{ {
auto base_backup_read_buffer = base_backup_entry->getReadBuffer(); size_t base_size = base_backup_entry->getSize();
read_buffer = std::make_unique<ConcatReadBuffer>(std::move(base_backup_read_buffer), std::move(read_buffer)); read_buffer = std::make_unique<ConcatSeekableReadBuffer>(
base_backup_entry->getReadBuffer(), base_size, std::move(read_buffer), size - base_size);
} }
return read_buffer; return read_buffer;
} }
@ -522,7 +523,7 @@ void BackupImpl::writeFile(const String & file_name, BackupEntryPtr entry)
base_checksum = base_backup->getFileChecksum(file_name); base_checksum = base_backup->getFileChecksum(file_name);
} }
std::unique_ptr<ReadBuffer> read_buffer; /// We'll set that later. std::unique_ptr<SeekableReadBuffer> read_buffer; /// We'll set that later.
std::optional<HashingReadBuffer> hashing_read_buffer; std::optional<HashingReadBuffer> hashing_read_buffer;
UInt64 hashing_pos = 0; /// Current position in `hashing_read_buffer`. UInt64 hashing_pos = 0; /// Current position in `hashing_read_buffer`.
@ -608,16 +609,9 @@ void BackupImpl::writeFile(const String & file_name, BackupEntryPtr entry)
auto copy_pos = use_base ? base_size : 0; auto copy_pos = use_base ? base_size : 0;
/// Move the current read position to the start position to copy data. /// Move the current read position to the start position to copy data.
/// If `read_buffer` is seekable it's easier, otherwise we can use ignore(). if (!read_buffer)
if (auto * seekable_buffer = dynamic_cast<SeekableReadBuffer *>(read_buffer.get()))
{
seekable_buffer->seek(copy_pos, SEEK_SET);
}
else
{
read_buffer = entry->getReadBuffer(); read_buffer = entry->getReadBuffer();
read_buffer->ignore(copy_pos); read_buffer->seek(copy_pos, SEEK_SET);
}
/// Copy the entry's data after `copy_pos`. /// Copy the entry's data after `copy_pos`.
auto out = writeFileImpl(getHexUIntLowercase(*checksum)); auto out = writeFileImpl(getHexUIntLowercase(*checksum));

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@ -11,6 +11,7 @@ namespace DB
{ {
class Context; class Context;
using ContextPtr = std::shared_ptr<const Context>; using ContextPtr = std::shared_ptr<const Context>;
class SeekableReadBuffer;
/// Base implementation of IBackup. /// Base implementation of IBackup.
/// Along with passed files it also stores backup metadata - a single file named ".backup" in XML format /// Along with passed files it also stores backup metadata - a single file named ".backup" in XML format
@ -53,7 +54,7 @@ protected:
/// Read a file from the backup. /// Read a file from the backup.
/// Low level: the function doesn't check base backup or checksums. /// Low level: the function doesn't check base backup or checksums.
virtual std::unique_ptr<ReadBuffer> readFileImpl(const String & file_name) const = 0; virtual std::unique_ptr<SeekableReadBuffer> readFileImpl(const String & file_name) const = 0;
/// Add a file to the backup. /// Add a file to the backup.
/// Low level: the function doesn't check base backup or checksums. /// Low level: the function doesn't check base backup or checksums.

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@ -56,7 +56,7 @@ void DirectoryBackup::closeImpl(const Strings & written_files_, bool writing_fin
} }
} }
std::unique_ptr<ReadBuffer> DirectoryBackup::readFileImpl(const String & file_name) const std::unique_ptr<SeekableReadBuffer> DirectoryBackup::readFileImpl(const String & file_name) const
{ {
auto file_path = path / file_name; auto file_path = path / file_name;
return disk->readFile(file_path); return disk->readFile(file_path);

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@ -27,7 +27,7 @@ private:
bool backupExists() const override; bool backupExists() const override;
void openImpl(OpenMode open_mode_) override; void openImpl(OpenMode open_mode_) override;
void closeImpl(const Strings & written_files_, bool writing_finalized_) override; void closeImpl(const Strings & written_files_, bool writing_finalized_) override;
std::unique_ptr<ReadBuffer> readFileImpl(const String & file_name) const override; std::unique_ptr<SeekableReadBuffer> readFileImpl(const String & file_name) const override;
std::unique_ptr<WriteBuffer> writeFileImpl(const String & file_name) override; std::unique_ptr<WriteBuffer> writeFileImpl(const String & file_name) override;
DiskPtr disk; DiskPtr disk;

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@ -1,5 +1,5 @@
#include <Backups/IBackupEntriesBatch.h> #include <Backups/IBackupEntriesBatch.h>
#include <IO/ReadBuffer.h> #include <IO/SeekableReadBuffer.h>
namespace DB namespace DB
@ -15,7 +15,7 @@ public:
UInt64 getSize() const override { return batch->getSize(index); } UInt64 getSize() const override { return batch->getSize(index); }
std::optional<UInt128> getChecksum() const override { return batch->getChecksum(index); } std::optional<UInt128> getChecksum() const override { return batch->getChecksum(index); }
std::unique_ptr<ReadBuffer> getReadBuffer() const override { return batch->getReadBuffer(index); } std::unique_ptr<SeekableReadBuffer> getReadBuffer() const override { return batch->getReadBuffer(index); }
private: private:
const std::shared_ptr<IBackupEntriesBatch> batch; const std::shared_ptr<IBackupEntriesBatch> batch;

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@ -17,7 +17,7 @@ public:
protected: protected:
IBackupEntriesBatch(const Strings & entry_names_) : entry_names(entry_names_) {} IBackupEntriesBatch(const Strings & entry_names_) : entry_names(entry_names_) {}
virtual std::unique_ptr<ReadBuffer> getReadBuffer(size_t index) = 0; virtual std::unique_ptr<SeekableReadBuffer> getReadBuffer(size_t index) = 0;
virtual UInt64 getSize(size_t index) = 0; virtual UInt64 getSize(size_t index) = 0;
virtual std::optional<UInt128> getChecksum(size_t) { return {}; } virtual std::optional<UInt128> getChecksum(size_t) { return {}; }

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@ -7,7 +7,7 @@
namespace DB namespace DB
{ {
class ReadBuffer; class SeekableReadBuffer;
/// A backup entry represents some data which should be written to the backup or has been read from the backup. /// A backup entry represents some data which should be written to the backup or has been read from the backup.
class IBackupEntry class IBackupEntry
@ -23,7 +23,7 @@ public:
virtual std::optional<UInt128> getChecksum() const { return {}; } virtual std::optional<UInt128> getChecksum() const { return {}; }
/// Returns a read buffer for reading the data. /// Returns a read buffer for reading the data.
virtual std::unique_ptr<ReadBuffer> getReadBuffer() const = 0; virtual std::unique_ptr<SeekableReadBuffer> getReadBuffer() const = 0;
}; };
using BackupEntryPtr = std::unique_ptr<IBackupEntry>; using BackupEntryPtr = std::unique_ptr<IBackupEntry>;

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@ -0,0 +1,139 @@
#include <IO/ConcatSeekableReadBuffer.h>
namespace DB
{
namespace ErrorCodes
{
extern const int ARGUMENT_OUT_OF_BOUND;
}
ConcatSeekableReadBuffer::BufferInfo::~BufferInfo()
{
if (own_in)
delete in;
}
ConcatSeekableReadBuffer::ConcatSeekableReadBuffer(std::unique_ptr<SeekableReadBuffer> buf1, size_t size1, std::unique_ptr<SeekableReadBuffer> buf2, size_t size2) : ConcatSeekableReadBuffer()
{
appendBuffer(std::move(buf1), size1);
appendBuffer(std::move(buf2), size2);
}
ConcatSeekableReadBuffer::ConcatSeekableReadBuffer(SeekableReadBuffer & buf1, size_t size1, SeekableReadBuffer & buf2, size_t size2) : ConcatSeekableReadBuffer()
{
appendBuffer(buf1, size1);
appendBuffer(buf2, size2);
}
void ConcatSeekableReadBuffer::appendBuffer(std::unique_ptr<SeekableReadBuffer> buffer, size_t size)
{
appendBuffer(buffer.release(), true, size);
}
void ConcatSeekableReadBuffer::appendBuffer(SeekableReadBuffer & buffer, size_t size)
{
appendBuffer(&buffer, false, size);
}
void ConcatSeekableReadBuffer::appendBuffer(SeekableReadBuffer * buffer, bool own, size_t size)
{
BufferInfo info;
info.in = buffer;
info.own_in = own;
info.size = size;
if (!size)
return;
buffers.emplace_back(std::move(info));
total_size += size;
if (current == buffers.size() - 1)
{
working_buffer = buffers[current].in->buffer();
pos = buffers[current].in->position();
}
}
bool ConcatSeekableReadBuffer::nextImpl()
{
if (current < buffers.size())
{
buffers[current].in->position() = pos;
while ((current < buffers.size()) && buffers[current].in->eof())
{
current_start_pos += buffers[current++].size;
if (current < buffers.size())
buffers[current].in->seek(0, SEEK_SET);
}
}
if (current >= buffers.size())
{
current_start_pos = total_size;
set(nullptr, 0);
return false;
}
working_buffer = buffers[current].in->buffer();
pos = buffers[current].in->position();
return true;
}
off_t ConcatSeekableReadBuffer::getPosition()
{
size_t current_pos = current_start_pos;
if (current < buffers.size())
current_pos += buffers[current].in->getPosition() + offset();
return current_pos;
}
off_t ConcatSeekableReadBuffer::seek(off_t off, int whence)
{
off_t new_position;
off_t current_position = getPosition();
if (whence == SEEK_SET)
new_position = off;
else if (whence == SEEK_CUR)
new_position = current_position + off;
else
throw Exception("ConcatSeekableReadBuffer::seek expects SEEK_SET or SEEK_CUR as whence", ErrorCodes::ARGUMENT_OUT_OF_BOUND);
if (new_position < 0)
throw Exception("SEEK_SET underflow: off = " + std::to_string(off), ErrorCodes::ARGUMENT_OUT_OF_BOUND);
if (static_cast<UInt64>(new_position) > total_size)
throw Exception("SEEK_CUR shift out of bounds", ErrorCodes::ARGUMENT_OUT_OF_BOUND);
if (static_cast<UInt64>(new_position) == total_size)
{
current = buffers.size();
current_start_pos = total_size;
set(nullptr, 0);
return new_position;
}
off_t change_position = new_position - current_position;
if ((working_buffer.begin() <= pos + change_position) && (pos + change_position <= working_buffer.end()))
{
/// Position is still inside the same working buffer.
pos += change_position;
assert(pos >= working_buffer.begin());
assert(pos <= working_buffer.end());
return new_position;
}
while (new_position < static_cast<off_t>(current_start_pos))
current_start_pos -= buffers[--current].size;
while (new_position >= static_cast<off_t>(current_start_pos + buffers[current].size))
current_start_pos += buffers[current++].size;
buffers[current].in->seek(new_position - current_start_pos, SEEK_SET);
working_buffer = buffers[current].in->buffer();
pos = buffers[current].in->position();
return new_position;
}
}

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@ -0,0 +1,46 @@
#pragma once
#include <IO/SeekableReadBuffer.h>
#include <vector>
namespace DB
{
/// Reads from the concatenation of multiple SeekableReadBuffer's
class ConcatSeekableReadBuffer : public SeekableReadBufferWithSize
{
public:
ConcatSeekableReadBuffer() : SeekableReadBufferWithSize(nullptr, 0) { }
ConcatSeekableReadBuffer(std::unique_ptr<SeekableReadBuffer> buf1, size_t size1, std::unique_ptr<SeekableReadBuffer> buf2, size_t size2);
ConcatSeekableReadBuffer(SeekableReadBuffer & buf1, size_t size1, SeekableReadBuffer & buf2, size_t size2);
void appendBuffer(std::unique_ptr<SeekableReadBuffer> buffer, size_t size);
void appendBuffer(SeekableReadBuffer & buffer, size_t size);
off_t seek(off_t off, int whence) override;
off_t getPosition() override;
std::optional<size_t> getTotalSize() override { return total_size; }
private:
bool nextImpl() override;
void appendBuffer(SeekableReadBuffer * buffer, bool own, size_t size);
struct BufferInfo
{
BufferInfo() = default;
BufferInfo(BufferInfo &&) = default;
~BufferInfo();
SeekableReadBuffer * in = nullptr;
bool own_in = false;
size_t size = 0;
};
std::vector<BufferInfo> buffers;
size_t total_size = 0;
size_t current = 0;
size_t current_start_pos = 0; /// Position of the current buffer's begin.
};
}

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@ -0,0 +1,131 @@
#include <IO/LimitSeekableReadBuffer.h>
namespace DB
{
namespace ErrorCodes
{
extern const int ARGUMENT_OUT_OF_BOUND;
extern const int LIMIT_EXCEEDED;
}
bool LimitSeekableReadBuffer::nextImpl()
{
if (end_position >= static_cast<off_t>(limit))
{
/// Limit reached.
set(in->position(), 0);
return false;
}
assert(position() >= in->position());
in->position() = position();
if (!in->next())
{
/// EOF reached.
set(in->position(), 0);
return false;
}
working_buffer = in->buffer();
pos = in->position();
end_position = in->getPosition() + in->available();
if (end_position > static_cast<off_t>(limit))
{
working_buffer.resize(working_buffer.size() - end_position + limit);
end_position = limit;
}
return true;
}
off_t LimitSeekableReadBuffer::seek(off_t off, int whence)
{
off_t new_position;
off_t current_position = getPosition();
if (whence == SEEK_SET)
new_position = off;
else if (whence == SEEK_CUR)
new_position = current_position + off;
else
throw Exception("LimitSeekableReadBuffer::seek expects SEEK_SET or SEEK_CUR as whence", ErrorCodes::ARGUMENT_OUT_OF_BOUND);
if (new_position < 0)
throw Exception("SEEK_SET underflow: off = " + std::to_string(off), ErrorCodes::ARGUMENT_OUT_OF_BOUND);
if (static_cast<UInt64>(new_position) > limit)
throw Exception("SEEK_CUR shift out of bounds", ErrorCodes::ARGUMENT_OUT_OF_BOUND);
off_t change_position = new_position - current_position;
if ((working_buffer.begin() <= pos + change_position) && (pos + change_position <= working_buffer.end()))
{
/// Position is still inside buffer.
pos += change_position;
assert(pos >= working_buffer.begin());
assert(pos <= working_buffer.end());
return new_position;
}
in->seek(new_position, SEEK_SET);
working_buffer = in->buffer();
pos = in->position();
end_position = in->getPosition() + in->available();
if (end_position > static_cast<off_t>(limit))
{
working_buffer.resize(working_buffer.size() - end_position + limit);
end_position = limit;
}
return new_position;
}
LimitSeekableReadBuffer::LimitSeekableReadBuffer(SeekableReadBuffer * in_, bool owns, UInt64 limit_)
: SeekableReadBuffer(in_ ? in_->position() : nullptr, 0)
, in(in_)
, owns_in(owns)
, limit(limit_)
{
assert(in);
off_t current_position = in->getPosition();
if (current_position > static_cast<off_t>(limit))
throw Exception("Limit for LimitSeekableReadBuffer exceeded", ErrorCodes::LIMIT_EXCEEDED);
working_buffer = in->buffer();
pos = in->position();
end_position = current_position + in->available();
if (end_position > static_cast<off_t>(limit))
{
working_buffer.resize(working_buffer.size() - end_position + limit);
end_position = limit;
}
}
LimitSeekableReadBuffer::LimitSeekableReadBuffer(SeekableReadBuffer & in_, UInt64 limit_)
: LimitSeekableReadBuffer(&in_, false, limit_)
{
}
LimitSeekableReadBuffer::LimitSeekableReadBuffer(std::unique_ptr<SeekableReadBuffer> in_, UInt64 limit_)
: LimitSeekableReadBuffer(in_.release(), true, limit_)
{
}
LimitSeekableReadBuffer::~LimitSeekableReadBuffer()
{
/// Update underlying buffer's position in case when limit wasn't reached.
in->position() = position();
if (owns_in)
delete in;
}
}

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@ -0,0 +1,33 @@
#pragma once
#include <base/types.h>
#include <IO/SeekableReadBuffer.h>
namespace DB
{
/** Allows to read from another SeekableReadBuffer no far than the specified offset.
* Note that the nested SeekableReadBuffer may read slightly more data internally to fill its buffer.
*/
class LimitSeekableReadBuffer : public SeekableReadBuffer
{
public:
LimitSeekableReadBuffer(SeekableReadBuffer & in_, UInt64 limit_);
LimitSeekableReadBuffer(std::unique_ptr<SeekableReadBuffer> in_, UInt64 limit_);
~LimitSeekableReadBuffer() override;
off_t seek(off_t off, int whence) override;
off_t getPosition() override { return end_position - available(); }
private:
SeekableReadBuffer * in;
bool owns_in;
UInt64 limit;
off_t end_position; /// Offset of the end of working_buffer.
LimitSeekableReadBuffer(SeekableReadBuffer * in_, bool owns, UInt64 limit_);
bool nextImpl() override;
};
}

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@ -448,7 +448,7 @@ private:
}); });
} }
std::unique_ptr<ReadBuffer> getReadBuffer(size_t index) override std::unique_ptr<SeekableReadBuffer> getReadBuffer(size_t index) override
{ {
initialize(); initialize();
return createReadBufferFromFileBase(file_paths[index], {}); return createReadBufferFromFileBase(file_paths[index], {});