diff --git a/programs/server/Server.cpp b/programs/server/Server.cpp
index 6ec357a9927..2feba9dfc46 100644
--- a/programs/server/Server.cpp
+++ b/programs/server/Server.cpp
@@ -2318,6 +2318,8 @@ try
             if (current_connections)
                 current_connections = waitServersToFinish(servers, servers_lock, server_settings.shutdown_wait_unfinished);
 
+            CancellationChecker::getInstance().terminateThread();
+
             if (current_connections)
                 LOG_WARNING(log, "Closed connections. But {} remain."
                     " Tip: To increase wait time add to config: <shutdown_wait_unfinished>60</shutdown_wait_unfinished>", current_connections);
diff --git a/src/Interpreters/CancellationChecker.cpp b/src/Interpreters/CancellationChecker.cpp
index 651efa73584..a7fbdf24497 100644
--- a/src/Interpreters/CancellationChecker.cpp
+++ b/src/Interpreters/CancellationChecker.cpp
@@ -30,17 +30,20 @@ CancellationChecker::CancellationChecker() : stop_thread(false)
 {
 }
 
-CancellationChecker::~CancellationChecker()
-{
-    stop_thread = true;
-}
-
 CancellationChecker& CancellationChecker::getInstance()
 {
     static CancellationChecker instance;
     return instance;
 }
 
+void CancellationChecker::terminateThread()
+{
+    LOG_TRACE(getLogger("CancellationChecker"), "Stopping CancellationChecker");
+    stop_thread = true;
+    cond_var.notify_all();
+}
+
+
 void CancellationChecker::cancelTask(std::shared_ptr<QueryStatus> query, CancelReason reason)
 {
     query->cancelQuery(/*kill=*/false, /*reason=*/reason);
diff --git a/src/Interpreters/CancellationChecker.h b/src/Interpreters/CancellationChecker.h
index 252cc0e7420..2def3537253 100644
--- a/src/Interpreters/CancellationChecker.h
+++ b/src/Interpreters/CancellationChecker.h
@@ -34,7 +34,6 @@ class CancellationChecker
 {
 private:
     CancellationChecker();
-    ~CancellationChecker();
 
     // Priority queue to manage tasks based on endTime
     std::multiset<QueryToTrack, CompareEndTime> querySet;
@@ -55,6 +54,8 @@ public:
     CancellationChecker(const CancellationChecker&) = delete;
     CancellationChecker& operator=(const CancellationChecker&) = delete;
 
+    void terminateThread();
+
     // Method to add a new task to the multiset
     void appendTask(const std::shared_ptr<QueryStatus> & query, const Int64 & timeout);