This runs PK lookup and skipping index stages on parts
in parallel, as described in #11564.
While #12277 sped up PK lookups, skipping index stage
may still be a bottleneck in a select query. Here we
parallelize both stages between parts.
On a query that uses a bloom filter skipping index to pick
2,688 rows out of 8,273,114,994 on a two day time span,
this change reduces latency from 10.5s to 1.5s.
Existing code that looks up marks that match the query has a pathological
case, when most of the part does in fact match the query.
The code works by recursively splitting a part into ranges and then discarding
the ranges that definitely do not match the query, based on primary key.
The problem is that it requires visiting every mark that matches the query,
making the complexity of this sort of look up O(n).
For queries that match exact range on the primary key, we can find
both left and right parts of the range with O(log 2) complexity.
This change implements exactly that.
To engage this optimization, the query must:
* Have a prefix list of the primary key.
* Have only range or single set element constraints for columns.
* Have only AND as a boolean operator.
Consider a table with `(service, timestamp)` as the primary key.
The following conditions will be optimized:
* `service = 'foo'`
* `service = 'foo' and timestamp >= now() - 3600`
* `service in ('foo')`
* `service in ('foo') and timestamp >= now() - 3600 and timestamp <= now`
The following will fall back to previous lookup algorithm:
* `timestamp >= now() - 3600`
* `service in ('foo', 'bar') and timestamp >= now() - 3600`
* `service = 'foo'`
Note that the optimization won't engage when PK has a range expression
followed by a point expression, since in that case the range is not continuous.
Trace query logging provides the following messages types of messages,
each representing a different kind of PK usage for a part:
```
Used optimized inclusion search over index for part 20200711_5710108_5710108_0 with 9 steps
Used generic exclusion search over index for part 20200711_5710118_5710228_5 with 1495 steps
Not using index on part 20200710_5710473_5710473_0
```
Number of steps translates to computational complexity.
Here's a comparison for before and after for a query over 24h of data:
```
Read 4562944 rows, 148.05 MiB in 45.19249672 sec., 100966 rows/sec., 3.28 MiB/sec.
Read 4183040 rows, 135.78 MiB in 0.196279627 sec., 21311636 rows/sec., 691.75 MiB/sec.
```
This is especially useful for queries that read data in order
and terminate early to return "last X things" matching a query.
See #11564 for more thoughts on this.
* commit 'ceac649c01b0158090cd271776f3219f5e7ff57c': (75 commits)
[docs] split misc statements (#12403)
Update 00405_pretty_formats.reference
Update PrettyCompactBlockOutputFormat.cpp
Update PrettyBlockOutputFormat.cpp
Update DataTypeNullable.cpp
Update 01383_remote_ambiguous_column_shard.sql
add output_format_pretty_grid_charset setting in docs
add setting output_format_pretty_grid_charset
Added a test for #11135
Update index.md
RIGHT and FULL JOIN for MergeJoin (#12118)
Update MergeTreeIndexFullText.cpp
restart the tests
[docs] add syntax highlight (#12398)
query fuzzer
Fix std::bad_typeid when JSON functions called with argument of wrong type.
Allow typeid_cast() to cast nullptr to nullptr.
fix another context-related segfault
[security docs] actually, only admins can create advisories
query fuzzer
...
Buffer engine is usually used on INSERTs, but right now there is no way
to track number of INSERTed rows per-table, since only summary metrics
exists:
- StorageBufferRows
- StorageBufferBytes
But it can be pretty useful to track INSERTed rows rate (and it can be
exposed via http_handlers for i.e. prometheus)
ReadBufferFromKafkaConsumer does not handle the case when there is
message with an error on non first position in the current batch, since
it goes through messages in the batch after poll and stop on first valid
message.
But later it can try to use message as valid:
- while storing offset
- get topic name
- ...
And besides the message itself is also invalid (you can find this in the
gdb traces below).
So just filter out messages win an error error after poll.
SIGSEGV was with the following stacktrace:
(gdb) bt
3 0x0000000010f05b4d in rd_kafka_offset_store (app_rkt=0x0, partition=0, offset=0) at ../contrib/librdkafka/src/rdkafka_offset.c:656
4 0x0000000010e69657 in cppkafka::Consumer::store_offset (this=0x7f2015210820, msg=...) at ../contrib/cppkafka/include/cppkafka/message.h:225
5 0x000000000e68f208 in DB::ReadBufferFromKafkaConsumer::storeLastReadMessageOffset (this=0x7f206a136618) at ../contrib/libcxx/include/iterator:1508
6 0x000000000e68b207 in DB::KafkaBlockInputStream::readImpl (this=0x7f202c689020) at ../src/Storages/Kafka/KafkaBlockInputStream.cpp:150
7 0x000000000dd1178d in DB::IBlockInputStream::read (this=this@entry=0x7f202c689020) at ../src/DataStreams/IBlockInputStream.cpp:60
8 0x000000000dd34c0a in DB::copyDataImpl<> () at ../src/DataStreams/copyData.cpp:21
9 DB::copyData () at ../src/DataStreams/copyData.cpp:62
10 0x000000000e67c8f2 in DB::StorageKafka::streamToViews () at ../contrib/libcxx/include/memory:3823
11 0x000000000e67d218 in DB::StorageKafka::threadFunc () at ../src/Storages/Kafka/StorageKafka.cpp:488
And some information from it:
(gdb) p this.current.__i
$14 = (std::__1::__wrap_iter<cppkafka::Message const*>::iterator_type) 0x7f1ca8f58660
# current-1
(gdb) p $14-1
$15 = (const cppkafka::Message *) 0x7f1ca8f58600
(gdb) p $16.handle_
$17 = {__ptr_ = {<std::__1::__compressed_pair_elem<rd_kafka_message_s*, 0, false>> = { __value_ = 0x7f203577f938}, ...}
(gdb) p *(rd_kafka_message_s*)0x7f203577f938
$24 = {err = RD_KAFKA_RESP_ERR__TRANSPORT, rkt = 0x0, partition = 0, payload = 0x7f202f0339c0, len = 63, key = 0x0, key_len = 0, offset = 0, _private = 0x7f203577f8c0}
# current
(gdb) p $14-0
$28 = (const cppkafka::Message *) 0x7f1ca8f58660
(gdb) p $28.handle_.__ptr_
$29 = {<std::__1::__compressed_pair_elem<rd_kafka_message_s*, 0, false>> = { __value_ = 0x7f184f129bf0}, ...}
(gdb) p *(rd_kafka_message_s*)0x7f184f129bf0
$30 = {err = RD_KAFKA_RESP_ERR_NO_ERROR, rkt = 0x7f1ed44fe000, partition = 1, payload = 0x7f1fc9bc6036, len = 242, key = 0x0, key_len = 0, offset = 2394853582209,
# current+1
(gdb) p (*($14+1)).handle_.__ptr_
$44 = {<std::__1::__compressed_pair_elem<rd_kafka_message_s*, 0, false>> = { __value_ = 0x7f184f129d30}, ...}
(gdb) p *(rd_kafka_message_s*)0x7f184f129d30
$45 = {err = RD_KAFKA_RESP_ERR_NO_ERROR, rkt = 0x7f1ed44fe000, partition = 1, payload = 0x7f1fc9bc612f, len = 31, key = 0x0, key_len = 0, offset = 2394853582210,
_private = 0x7f184f129cc0}
# distance from the beginning
(gdb) p messages.__end_-messages.__begin_
$34 = 65536
(gdb) p ($14-0)-messages.__begin_
$37 = 8965
(gdb) p ($14-1)-messages.__begin_
$38 = 8964
# parsing info
(gdb) p allowed
$39 = false
(gdb) p new_rows
$40 = 1
(gdb) p total_rows
$41 = 8964
# current buffer is invalid
(gdb) p *buffer.__ptr_
$50 = {<DB::ReadBuffer> = {<DB::BufferBase> = {pos = 0x7f202f0339c0 "FindCoordinator response error: Local: Broker transport failure", bytes = 47904863385, working_buffer = {
begin_pos = 0x7f202f0339c0 "FindCoordinator response error: Local: Broker transport failure",
end_pos = 0x7f202f0339c0 "FindCoordinator response error: Local: Broker transport failure"}, internal_buffer = {
v0: check message errors in ReadBufferFromKafkaConsumer::nextImpl() (but
this may lead to using of that messages after and SIGSEGV again, doh).
v2: skip messages with an error after poll.
* simplify reading in order of sorting key
* add perf test for reading many parts
* Revert "simplify reading in order of sorting key"
This reverts commit 7267d7c46e.
* add threshold for preliminary merge for reading in order
* better threshold
* limit threads in test
After #11599 it is possible that messages of the
ReadBufferFromKafkaConsumer will be cleaned-up right in
read_kafka_message callback (from KafkaBlockInputStream) if the stop
flag isset (i.e. DROP TABLE is waiting the consumer), and if
read_kafka_message already processed some rows it will not return 0 and
the loop after will try to get current topic from the buffer, which uses
messages in the underlying and this will got SIGSEGV:
12:14:56.173262 [ 55421 ] {f7930856-d478-4e41-af56-24ce7b693e95} <Debug> executeQuery: (from 0.0.0.0:0, user: ) DROP TABLE IF EXISTS data.queue
12:14:56.173285 [ 55421 ] {f7930856-d478-4e41-af56-24ce7b693e95} <Trace> StorageKafka (newly_queue): Waiting for cleanup
12:14:56.180016 [ 55390 ] {} <Trace> BaseDaemon: Received signal 11
12:14:56.180267 [ 4914 ] {} <Fatal> BaseDaemon: ########################################
12:14:56.181879 [ 4914 ] {} <Fatal> BaseDaemon: (version 20.6.1.1, build id: 4CE0298F08583658) (from thread 55468) (no query) Received signal Segmentation fault (11)
12:14:56.181900 [ 4914 ] {} <Fatal> BaseDaemon: Address: 0x8 Access: read. Address not mapped to object.
12:14:56.181909 [ 4914 ] {} <Fatal> BaseDaemon: Stack trace:
12:14:56.184676 [ 4914 ] {} <Fatal> BaseDaemon: 3. /ch/contrib/cppkafka/include/cppkafka/message.h:111: DB::KafkaBlockInputStream::readImpl() @ 0xe343f1c in /usr/lib/debug/usr/bin/clickhouse
12:14:56.185553 [ 4914 ] {} <Fatal> BaseDaemon: 4. /ch/contrib/libcxx/include/vector:1003: DB::IBlockInputStream::read() @ 0xd9d95bd in /usr/lib/debug/usr/bin/clickhouse
12:14:56.188238 [ 4914 ] {} <Fatal> BaseDaemon: 5. /ch/src/DataStreams/copyData.cpp:26: DB::copyData() @ 0xd9f712a in /usr/lib/debug/usr/bin/clickhouse
12:14:56.188780 [ 4914 ] {} <Fatal> BaseDaemon: 6. /ch/contrib/libcxx/include/vector:1532: DB::StorageKafka::streamToViews() @ 0xe335e73 in /usr/lib/debug/usr/bin/clickhouse
12:14:56.189331 [ 4914 ] {} <Fatal> BaseDaemon: 7. /ch/src/Storages/Kafka/StorageKafka.cpp:491: DB::StorageKafka::threadFunc() @ 0xe336738 in /usr/lib/debug/usr/bin/clickhouse
55421 thread (shows that it still waiting for deactivation):
5 std::__1::lock_guard<>::lock_guard () at ../contrib/libcxx/include/__mutex_base:90
6 DB::BackgroundSchedulePoolTaskInfo::deactivate (this=0x7fc7e4465f20) at ../src/Core/BackgroundSchedulePool.cpp:59
7 DB::StorageKafka::shutdown (this=0x7fc7e45e4600) at ../contrib/libcxx/include/memory:3821
And just in case thread where read_kafka_message is called:
0 DB::ReadBufferFromKafkaConsumer::nextImpl (this=0x7fd4901d4118) at ../contrib/libcxx/include/atomic:1491
1 DB::ReadBuffer::next (this=0x7fd4901d4118) at ../src/IO/ReadBuffer.h:59
2 DB::ReadBuffer::eof (this=0x7fd4901d4118) at ../src/IO/ReadBuffer.h:81
3 DB::skipWhitespaceIfAny (buf=...) at ../src/IO/ReadHelpers.h:945
4 DB::JSONEachRowRowInputFormat::readRow (ext=..., columns=..., this=0x7fd499a7a020) at ../src/Processors/Formats/Impl/JSONEachRowRowInputFormat.cpp:222
5 DB::JSONEachRowRowInputFormat::readRow (this=0x7fd499a7a020, columns=..., ext=...) at ../src/Processors/Formats/Impl/JSONEachRowRowInputFormat.cpp:218
6 DB::IRowInputFormat::generate (this=0x7fd499a7a020) at ../src/Processors/Formats/IRowInputFormat.cpp:64
7 DB::ISource::work (this=0x7fd499a7a020) at ../src/Processors/ISource.cpp:48
8 DB::KafkaBlockInputStream::<lambda()>::operator()(void) const () at ../contrib/libcxx/include/memory:3826
9 DB::KafkaBlockInputStream::readImpl (this=0x7fd46e718820) at ../contrib/libcxx/include/new:340
Cc: @filimonov
Possible approach for fixing #10574
The problem is that prepared sets are built correctly, it is a hash map of key -> set
where key is a hash of AST and list of data types (when we a list of
tuples of literals).
However, when the key is built from the index to try and find if there
exists a prepared set that would match it looks for data types of the
primary key (see how data_types is populated) because the primary key
has only one field (v in my example) it can not find the prepared set.
The patch looks for any prepared indexes where data types match for the
subset of fields found in primary key, we are not interested in other
fields anyway for the purpose of primary key pruning.
* master: (114 commits)
Update alter.md (#11823)
Update PODArray.h
Added a test for #6549
Update create.md
Update create.md
replacingmergetree translate into "替换合并树“ better (#11814)
Whitespace
Fix style
Added a test
Fix another 10% of bad code #11529
Update join.md (#11798)
Update memory.md (#11800)
Whitespace
Check for tests with "fail" in their names
Fix 10% of bad code #11756
Update PODArray.h
avoid duplicate short system name
adapt recent result as well
[website] tune benchmark pages styling + add extra checks
Added MSan suppression for Hyperscan
...
# Conflicts:
# src/Common/ErrorCodes.cpp
Add formats tests, fixes for JSONCompactEachRowWithNamesAndTypes, TSVWithNamesAndTypes. Some CR fixes
Add sanitizing for kafka_max_block_size and kafka_poll_max_batch_size
Example of such functions is rand()
And this patch disables only optimize_skip_unused_shards, i.e. INSERT
code path does not changed, so it will work as before.
After #11325 trailing whitespaces has been removed for data skipping
indicies, and it may be different, if you have multiple skip indices,
and in this case new server will not load such tables, because metadata
will be different.
Fix this by re-parse metadata in zookeeper.
