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4900 Commits

Author SHA1 Message Date
Nikolai Kochetov
5e5a6ff654 Merge branch 'master' into qoega-fix-access-gtest-in-arcadia 2021-08-12 12:02:15 +03:00
Alexander Kuzmenkov
8f9845722a
Merge pull request #27250 from azat/minmax-nullable-new-format 
Add new index data skipping minmax index format for proper Nullable support
 2021-08-11 13:56:16 +03:00
Alexey Milovidov
08f8511854 Fix Style 2021-08-11 06:52:28 +03:00
alexey-milovidov
54d8282209
Merge pull request #27248 from azat/mt-mutation-stuck-fix 
Fix mutation stuck on invalid partitions in non-replicated MergeTree
 2021-08-11 06:10:15 +03:00
alexey-milovidov
a0a5c0da32
Update BackgroundJobsExecutor.cpp 2021-08-11 06:08:30 +03:00
Nikolai Kochetov
8613cfd4e2
Merge branch 'master' into fix-access-gtest-in-arcadia 2021-08-10 16:13:11 +03:00
Maksim Kita
87fb75b272
Merge pull request #27191 from FArthur-cmd/memory-tracker-26043 
Client with flag for memory tracker
 2021-08-10 14:01:02 +03:00
Nikolai Kochetov
a1ec7f75c5 Merge branch 'master' into qoega-fix-access-gtest-in-arcadia 2021-08-10 11:31:47 +03:00
Nikolai Kochetov
bb4c11cd27
Merge pull request #27298 from ClickHouse/fix-23515 
Fix bug from #23515.
 2021-08-09 23:25:30 +03:00
Nikolai Kochetov
8cc493a3cd Try fix build. 2021-08-09 18:09:29 +03:00
Maksim Kita
b8b24684b4
Merge pull request #27273 from ClickHouse/remove-streams-from-dicts 
Remove streams from dicts
 2021-08-09 15:58:37 +03:00
Nikita Mikhaylov
73d3f2c60f
Merge pull request #26313 from fastio/control_execution_period_of_clearOldTemporaryDirectories 
Control the execution period of clear old temporary directories by parameter
 2021-08-09 14:29:24 +03:00
Nikolai Kochetov
4a00e402ae Fix spelling. 2021-08-09 12:09:09 +03:00
Nikolai Kochetov
372293b85d
Merge branch 'master' into fix-27179 2021-08-09 11:59:22 +03:00
Azat Khuzhin
038241b6ed Add new index data skipping minmax index format for proper Nullable support 
Note, that it cannot be done w/o new extension, since index does not
have any header.

v2: use IDisk interface for existence check
v3: remove extra file existence check
v4: fix MATERIALIZE INDEX
 2021-08-08 19:30:12 +03:00
Azat Khuzhin
91d7f3daa7 Fix lock-order-inversion while notifying about finished mutations 
TSAN reports [1]:

  WARNING: ThreadSanitizer: lock-order-inversion (potential deadlock) (pid=36)
    Cycle in lock order graph: M16388 (0x7b7400011d68) => M1030334152907497744 (0x000000000000) => M16388

    Mutex M1030334152907497744 acquired here while holding mutex M16388 in thread T4:
      0 pthread_mutex_lock <null> (clickhouse+0x967d536)
      1 std::__1::__libcpp_mutex_lock(pthread_mutex_t*) obj-x86_64-linux-gnu/../contrib/libcxx/include/__threading_support:405:10 (clickhouse+0x1b25c7d9)
      2 std::__1::mutex::lock() obj-x86_64-linux-gnu/../contrib/libcxx/src/mutex.cpp:33:14 (clickhouse+0x1b25c7d9)
      3 std::__1::lock_guard<std::__1::mutex>::lock_guard(std::__1::mutex&) obj-x86_64-linux-gnu/../contrib/libcxx/include/__mutex_base:91:27 (clickhouse+0x15220cd9)
      4 DB::StorageMergeTree::getIncompleteMutationsStatus(long, std::__1::set<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::less<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > >, std:>
      5 DB::StorageMergeTree::waitForMutation(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)::$_0::operator()() const obj-x86_64-linux-gnu/../src/Storages/StorageMergeTree.cpp:464:36 (clickhouse+0x1521e2b1)
      6 void std::__1::condition_variable::wait<DB::StorageMergeTree::waitForMutation(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)::$_0>(std::__1::unique_lock<std::__1::mutex>&, DB::StorageMergeTree::waitForMutation(lon>
      7 DB::StorageMergeTree::waitForMutation(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) obj-x86_64-linux-gnu/../src/Storages/StorageMergeTree.cpp:469:29 (clickhouse+0x1521e2b1)
      8 DB::StorageMergeTree::mutate(DB::MutationCommands const&, std::__1::shared_ptr<DB::Context const>) obj-x86_64-linux-gnu/../src/Storages/StorageMergeTree.cpp:496:9 (clickhouse+0x15221738)
      9 DB::InterpreterAlterQuery::execute() obj-x86_64-linux-gnu/../src/Interpreters/InterpreterAlterQuery.cpp:113:16 (clickhouse+0x141182f6)
      10 DB::executeQueryImpl(char const*, char const*, std::__1::shared_ptr<DB::Context>, bool, DB::QueryProcessingStage::Enum, bool, DB::ReadBuffer*) obj-x86_64-linux-gnu/../src/Interpreters/executeQuery.cpp:560:32 (clickhouse+0x149152f6)
      11 DB::executeQuery(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::shared_ptr<DB::Context>, bool, DB::QueryProcessingStage::Enum, bool) obj-x86_64-linux-gnu/../src/Interpreters/executeQuery.cpp:909:30 (clickhous>
      12 DB::TCPHandler::runImpl() obj-x86_64-linux-gnu/../src/Server/TCPHandler.cpp:313:24 (clickhouse+0x153270af)

      Hint: use TSAN_OPTIONS=second_deadlock_stack=1 to get more informative warning message

    Mutex M16388 acquired here while holding mutex M1030334152907497744 in thread T59:
      0 pthread_mutex_lock <null> (clickhouse+0x967d536)
      1 std::__1::__libcpp_mutex_lock(pthread_mutex_t*) obj-x86_64-linux-gnu/../contrib/libcxx/include/__threading_support:405:10 (clickhouse+0x1b25c7d9)
      2 std::__1::mutex::lock() obj-x86_64-linux-gnu/../contrib/libcxx/src/mutex.cpp:33:14 (clickhouse+0x1b25c7d9)
      3 std::__1::unique_lock<std::__1::mutex>::unique_lock(std::__1::mutex&) obj-x86_64-linux-gnu/../contrib/libcxx/include/__mutex_base:119:61 (clickhouse+0x15226c31)
      4 DB::StorageMergeTree::selectPartsToMutate(std::__1::shared_ptr<DB::StorageInMemoryMetadata const> const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >*, std::__1::shared_ptr<DB::RWLockImpl::LockHolderImpl>&) obj-x86_64-linux->
      5 DB::StorageMergeTree::scheduleDataProcessingJob(DB::IBackgroundJobExecutor&) obj-x86_64-linux-gnu/../src/Storages/StorageMergeTree.cpp:1060:28 (clickhouse+0x15228b10)
      6 DB::BackgroundJobsExecutor::scheduleJob() obj-x86_64-linux-gnu/../src/Storages/MergeTree/BackgroundJobsExecutor.cpp:229:17 (clickhouse+0x14f441dc)
      7 DB::IBackgroundJobExecutor::backgroundTaskFunction() obj-x86_64-linux-gnu/../src/Storages/MergeTree/BackgroundJobsExecutor.cpp:185:10 (clickhouse+0x14f438ed)

  [1]: https://clickhouse-test-reports.s3.yandex.net/27248/4f3b80ff33c846465983aa2bc9ae9490e1118b15/fuzzer_tsan/report.htmlfail1
 2021-08-08 19:28:29 +03:00
Azat Khuzhin
7964355ecf Fix mutation stuck on invalid partitions in non-replicated MergeTree 
v2: Do not try to process empty mutations
    Found with flaky check [1].

      [1]: https://clickhouse-test-reports.s3.yandex.net/27248/66e8c0833392c20ba8dba3780f2b0d5c18f8194e/functional_stateless_tests_flaky_check_(address).html#fail1
 2021-08-08 19:28:15 +03:00
Azat Khuzhin
5139067631 Guard BackgroundJobsExecutor from thread termination in case of uncaught exception 2021-08-08 19:27:58 +03:00
Azat Khuzhin
702d9955c0 Fix distributed queries with zero shards and aggregation 2021-08-08 19:22:49 +03:00
Azat Khuzhin
3be3c503aa Fix some comments 2021-08-08 09:58:07 +03:00
alexey-milovidov
a7e26506cf
Merge pull request #26951 from ianton-ru/zero_copy_by_default 
Set allow_remote_fs_zero_copy_replication to true by default
 2021-08-08 04:46:49 +03:00
alexey-milovidov
ba3fbbaab0
Update ReplicatedMergeTreeMergeStrategyPicker.cpp 2021-08-08 04:43:59 +03:00
alexey-milovidov
e6e9a27d8f
Merge pull request #27377 from evillique/bz2 
Add support for bzip2 compression method
 2021-08-08 04:40:13 +03:00
alexey-milovidov
c5207fc237
Merge pull request #26466 from azat/optimize-dist-select 
Rework SELECT from Distributed optimizations
 2021-08-08 03:59:32 +03:00
mergify[bot]
9869c8bb10
Merge branch 'master' into zero_copy_by_default 2021-08-07 16:53:44 +00:00
alexey-milovidov
24cc073a22
Merge pull request #27328 from ClickHouse/fix_partition_id_validation 
Fix partition id validation
 2021-08-07 18:45:19 +03:00
Nikolay Degterinsky
9a45458faf Add bzip2 file compression 2021-08-07 00:25:52 +00:00
Alexander Tokmakov
5e2bfd5ba1 fix partition id validation 2021-08-06 23:56:51 +03:00
Nikolai Kochetov
3cbeab8959 Fix incorrect row-level filtering 2021-08-06 21:16:06 +03:00
Nikolai Kochetov
157ecef3c2
Merge pull request #27227 from ClickHouse/do-not-update-settings-for-view 
Revert #24095. User-level settings will affect queries from view.
 2021-08-06 20:57:36 +03:00
mergify[bot]
c696817a79
Merge branch 'master' into control_execution_period_of_clearOldTemporaryDirectories 2021-08-06 16:16:22 +00:00
Nikolai Kochetov
7320411a7f Fix bug from #23515. 2021-08-06 16:39:11 +03:00
vdimir
ffab19caad
Fix hasJoin in StorageView.cpp 2021-08-06 13:48:47 +03:00
vdimir
76ca40857a
Better error message for changed json_use_nulls in StorageView, check ast 2021-08-06 12:16:26 +03:00
tavplubix
14ef66e49b
Merge pull request #25895 from ClickHouse/improve_create_or_replace 
Improve CREATE OR REPLACE query
 2021-08-06 11:58:46 +03:00
Nikolai Kochetov
39ff5ab478 Merge branch 'master' into remove-streams-from-dicts 2021-08-06 11:46:27 +03:00
Nikolai Kochetov
13f95f3fdf Streams -> Processors for dicts, part 3. 2021-08-06 11:41:45 +03:00
alexey-milovidov
1a3d8cebd2
Merge pull request #27197 from azat/nullable-index-fix 
Fix on-disk format breakage for secondary indices over Nullable column
 2021-08-05 21:52:18 +03:00
Artur
d2869d2e2b add test for memory tracker in client 2021-08-05 16:20:24 +00:00
vdimir
a427b19d3a
Check join_use_nulls changed in StorageView::read 2021-08-05 18:38:52 +03:00
Kseniia Sumarokova
5edd9e0513
Merge pull request #27198 from kssenii/postgres-db-schema 
Support schema for postgres database engine
 2021-08-05 18:30:47 +03:00
Kruglov Pavel
59a94bd322
Merge pull request #27183 from ClickHouse/fix_detached_parts_name_partsing 
Fix part name parsing in system.detached_parts
 2021-08-05 18:21:03 +03:00
Nikolai Kochetov
fc12310ee8 Revert #24095. User-level settings will affect queries from view. 2021-08-05 17:17:22 +03:00
Alexander Kuzmenkov
d852207b0e
Merge pull request #25721 from CurtizJ/read-in-order-perf-2 
Reduce memory usage in queries with `ORDER BY primary_key
 2021-08-05 16:13:48 +03:00
Maksim Kita
7fdf3cc263
Merge pull request #27180 from kitaisreal/storage-system-replicas-added-column-replica-is-active 
Storage system replicas added column replica is active
 2021-08-05 12:46:53 +03:00
Azat Khuzhin
dee27fcbb9 Fix on-disk format breakage for secondary indices over Nullable column 
[1] breaks on disk format (and the relevant change in the:

  [1]: https://github.com/ClickHouse/ClickHouse/pull/12455#discussion_r682830812

Too bad that I checked this patchset only for compatibility after
reverting this patch [2] (use case: I've applied it manually, then
revert it, and data skipping indexes over Nullable column had been
broken)

  [2]: https://github.com/ClickHouse/ClickHouse/pull/12455#issuecomment-823423772

But this patchset actually breaks compatibility with older versions of
clickhouse for Nullable data skipping indexes after simple upgrade:

Here is a simple reproducer:

    --
    -- run this with 21.6 or similar (i.e. w/o this patch)
    --

    CREATE TABLE data
    (
        `key` Int,
        `value` Nullable(Int),
        INDEX value_index value TYPE minmax GRANULARITY 1
    )
    ENGINE = MergeTree
    ORDER BY key;

    INSERT INTO data SELECT
        number,
        number
    FROM numbers(10000);

    SELECT * FROM data WHERE value = 20000 SETTINGS force_data_skipping_indices = 'value_index' SETTINGS force_data_skipping_indices = 'value_index', max_rows_to_read=1;

Now upgrade and run the query again:

    SELECT * FROM data WHERE value = 20000 SETTINGS force_data_skipping_indices = 'value_index' SETTINGS force_data_skipping_indices = 'value_index', max_rows_to_read=1;

And it will fail because of on disk format changes:

    $ ll --time-style=+ data/*/data/all_1_1_0/skp*.idx
    -rw-r----- 1 azat azat 36  data/with_nullable_patch/data/all_1_1_0/skp_idx_value_index.idx
    -rw-r----- 1 azat azat 37  data/without_nullable_patch/data/all_1_1_0/skp_idx_value_index.idx

    $ md5sum data/*/data/all_1_1_0/skp*.idx
    a19c95c4a14506c65665a1e30ab404bf  data/with_nullable_patch/data/all_1_1_0/skp_idx_value_index.idx
    e50e2fcfa873b232196623d56ab26105  data/without_nullable_patch/data/all_1_1_0/skp_idx_value_index.idx

Note, that there is no stable release with this patch included yet, so
no need to backport.

Also note that you may create data skipping indexes over Nullable
column even before [3].

  [3]: https://github.com/ClickHouse/ClickHouse/pull/12455

v2: break cases when granulas has Null in values due to backward
compatibility
 2021-08-05 00:19:38 +03:00
kssenii
f06703a7c9 Support schema for postgres database engine 2021-08-04 20:52:45 +00:00
Azat Khuzhin
7a47327980 Fix used_storages by using log_queries from local context 
I don't have log_queries enabled by default.
 2021-08-04 21:44:19 +03:00
Anton Popov
9586bb7e90 fix pvs 2021-08-04 20:42:22 +03:00
Anton Popov
915ef50c2d optimize reading in order of key more 2021-08-04 18:18:03 +03:00