#include #include #include #include #include #include #include #include namespace CurrentMetrics { extern const Metric ReplicatedChecks; } namespace DB { namespace ErrorCodes { extern const int CORRUPTED_DATA; extern const int LOGICAL_ERROR; extern const int INCORRECT_MARK; extern const int EMPTY_LIST_OF_COLUMNS_PASSED; } namespace { /** To read and checksum single stream (a pair of .bin, .mrk files) for a single column. */ class Stream { public: String base_name; String bin_file_path; String mrk_file_path; private: ReadBufferFromFile file_buf; HashingReadBuffer compressed_hashing_buf; CompressedReadBuffer uncompressing_buf; public: HashingReadBuffer uncompressed_hashing_buf; private: ReadBufferFromFile mrk_file_buf; public: HashingReadBuffer mrk_hashing_buf; Stream(const String & path, const String & base_name) : base_name(base_name), bin_file_path(path + base_name + ".bin"), mrk_file_path(path + base_name + ".mrk"), file_buf(bin_file_path), compressed_hashing_buf(file_buf), uncompressing_buf(compressed_hashing_buf), uncompressed_hashing_buf(uncompressing_buf), mrk_file_buf(mrk_file_path), mrk_hashing_buf(mrk_file_buf) {} void assertMark() { MarkInCompressedFile mrk_mark; readIntBinary(mrk_mark.offset_in_compressed_file, mrk_hashing_buf); readIntBinary(mrk_mark.offset_in_decompressed_block, mrk_hashing_buf); bool has_alternative_mark = false; MarkInCompressedFile alternative_data_mark = {}; MarkInCompressedFile data_mark = {}; /// If the mark should be exactly at the border of blocks, we can also use a mark pointing to the end of previous block, /// and the beginning of next. if (!uncompressed_hashing_buf.hasPendingData()) { /// Get a mark pointing to the end of previous block. has_alternative_mark = true; alternative_data_mark.offset_in_compressed_file = compressed_hashing_buf.count() - uncompressing_buf.getSizeCompressed(); alternative_data_mark.offset_in_decompressed_block = uncompressed_hashing_buf.offset(); if (mrk_mark == alternative_data_mark) return; uncompressed_hashing_buf.next(); /// At the end of file `compressed_hashing_buf.count()` points to the end of the file even before `calling next()`, /// and the check you just performed does not work correctly. For simplicity, we will not check the last mark. if (uncompressed_hashing_buf.eof()) return; } data_mark.offset_in_compressed_file = compressed_hashing_buf.count() - uncompressing_buf.getSizeCompressed(); data_mark.offset_in_decompressed_block = uncompressed_hashing_buf.offset(); if (mrk_mark != data_mark) throw Exception("Incorrect mark: " + data_mark.toString() + (has_alternative_mark ? " or " + alternative_data_mark.toString() : "") + " in data, " + mrk_mark.toString() + " in " + mrk_file_path + " file", ErrorCodes::INCORRECT_MARK); } void assertEnd() { if (!uncompressed_hashing_buf.eof()) throw Exception("EOF expected in " + bin_file_path + " file" + " at position " + toString(compressed_hashing_buf.count()) + " (compressed), " + toString(uncompressed_hashing_buf.count()) + " (uncompressed)", ErrorCodes::CORRUPTED_DATA); if (!mrk_hashing_buf.eof()) throw Exception("EOF expected in " + mrk_file_path + " file" + " at position " + toString(mrk_hashing_buf.count()), ErrorCodes::CORRUPTED_DATA); } void saveChecksums(MergeTreeData::DataPart::Checksums & checksums) { checksums.files[base_name + ".bin"] = MergeTreeData::DataPart::Checksums::Checksum( compressed_hashing_buf.count(), compressed_hashing_buf.getHash(), uncompressed_hashing_buf.count(), uncompressed_hashing_buf.getHash()); checksums.files[base_name + ".mrk"] = MergeTreeData::DataPart::Checksums::Checksum( mrk_hashing_buf.count(), mrk_hashing_buf.getHash()); } }; } MergeTreeData::DataPart::Checksums checkDataPart( const String & path_, size_t index_granularity, bool require_checksums, const DataTypes & primary_key_data_types, std::function is_cancelled) { Logger * log = &Logger::get("checkDataPart"); /** Responsibility: * - read list of columns from columns.txt; * - read checksums if exist; * - read (and validate checksum) of primary.idx; obtain number of marks; * - read data files and marks for each stream of each column; calculate and validate checksums; * - check that there are the same number of rows in each column; * - check that all marks files have the same size; */ CurrentMetrics::Increment metric_increment{CurrentMetrics::ReplicatedChecks}; String path = path_; if (!path.empty() && path.back() != '/') path += "/"; NamesAndTypesList columns; { ReadBufferFromFile buf(path + "columns.txt"); columns.readText(buf); assertEOF(buf); } /// Checksums from file checksums.txt. May be absent. If present, they are subsequently compared with the actual data checksums. MergeTreeData::DataPart::Checksums checksums_txt; if (require_checksums || Poco::File(path + "checksums.txt").exists()) { ReadBufferFromFile buf(path + "checksums.txt"); checksums_txt.read(buf); assertEOF(buf); } /// Real checksums based on contents of data. Must correspond to checksums.txt. If not - it means the data is broken. MergeTreeData::DataPart::Checksums checksums_data; size_t marks_in_primary_key = 0; { ReadBufferFromFile file_buf(path + "primary.idx"); HashingReadBuffer hashing_buf(file_buf); if (!primary_key_data_types.empty()) { size_t key_size = primary_key_data_types.size(); MutableColumns tmp_columns(key_size); for (size_t j = 0; j < key_size; ++j) tmp_columns[j] = primary_key_data_types[j]->createColumn(); while (!hashing_buf.eof()) { if (is_cancelled()) return {}; ++marks_in_primary_key; for (size_t j = 0; j < key_size; ++j) primary_key_data_types[j]->deserializeBinary(*tmp_columns[j].get(), hashing_buf); } } else { hashing_buf.tryIgnore(std::numeric_limits::max()); } size_t primary_idx_size = hashing_buf.count(); checksums_data.files["primary.idx"] = MergeTreeData::DataPart::Checksums::Checksum(primary_idx_size, hashing_buf.getHash()); } /// Optional files count.txt, partition.dat, minmax_*.idx. Just calculate checksums for existing files. Poco::DirectoryIterator dir_end; for (Poco::DirectoryIterator dir_it(path); dir_it != dir_end; ++dir_it) { const String & file_name = dir_it.name(); if (file_name == "count.txt" || file_name == "partition.dat" || (startsWith(file_name, "minmax_") && endsWith(file_name, ".idx"))) { ReadBufferFromFile file_buf(dir_it->path()); HashingReadBuffer hashing_buf(file_buf); hashing_buf.tryIgnore(std::numeric_limits::max()); checksums_data.files[file_name] = MergeTreeData::DataPart::Checksums::Checksum(hashing_buf.count(), hashing_buf.getHash()); } } if (is_cancelled()) return {}; /// If count.txt file exists, use it as source of truth for number of rows. Otherwise just check that all columns have equal amount of rows. std::optional rows; if (Poco::File(path + "count.txt").exists()) { ReadBufferFromFile buf(path + "count.txt"); size_t count = 0; readText(count, buf); assertEOF(buf); rows = count; } /// Read all columns, calculate checksums and validate marks. for (const NameAndTypePair & name_type : columns) { LOG_DEBUG(log, "Checking column " + name_type.name + " in " + path); std::map streams; size_t column_size = 0; size_t mark_num = 0; while (true) { IDataType::DeserializeBinaryBulkSettings settings; /// Check that mark points to current position in file. bool marks_eof = false; name_type.type->enumerateStreams([&](const IDataType::SubstreamPath & substream_path) { String file_name = IDataType::getFileNameForStream(name_type.name, substream_path); auto & stream = streams.try_emplace(file_name, path, file_name).first->second; try { if (!stream.mrk_hashing_buf.eof()) stream.assertMark(); else marks_eof = true; } catch (Exception & e) { e.addMessage("Cannot read mark " + toString(mark_num) + " at row " + toString(column_size) + " in file " + stream.mrk_file_path + ", mrk file offset: " + toString(stream.mrk_hashing_buf.count())); throw; } }, settings.path); ++mark_num; /// Read index_granularity rows from column. /// NOTE Shared array sizes of Nested columns are read more than once. That's Ok. MutableColumnPtr tmp_column = name_type.type->createColumn(); settings.getter = [&](const IDataType::SubstreamPath & substream_path) { String file_name = IDataType::getFileNameForStream(name_type.name, substream_path); auto stream_it = streams.find(file_name); if (stream_it == streams.end()) throw Exception("Logical error: cannot find stream " + file_name, ErrorCodes::LOGICAL_ERROR); return &stream_it->second.uncompressed_hashing_buf; }; IDataType::DeserializeBinaryBulkStatePtr state; name_type.type->deserializeBinaryBulkStatePrefix(settings, state); name_type.type->deserializeBinaryBulkWithMultipleStreams(*tmp_column, index_granularity, settings, state); size_t read_size = tmp_column->size(); column_size += read_size; if (read_size < index_granularity) break; else if (marks_eof) throw Exception("Unexpected end of mrk file while reading column " + name_type.name, ErrorCodes::CORRUPTED_DATA); if (is_cancelled()) return {}; } /// Check that number of rows are equal in each column. if (!rows) rows = column_size; else if (*rows != column_size) throw Exception{"Unexpected number of rows in column " + name_type.name + " (" + toString(column_size) + ", expected: " + toString(*rows) + ")", ErrorCodes::SIZES_OF_COLUMNS_DOESNT_MATCH}; /// Save checksums for column. name_type.type->enumerateStreams([&](const IDataType::SubstreamPath & substream_path) { String file_name = IDataType::getFileNameForStream(name_type.name, substream_path); auto stream_it = streams.find(file_name); if (stream_it == streams.end()) throw Exception("Logical error: cannot find stream " + file_name, ErrorCodes::LOGICAL_ERROR); stream_it->second.assertEnd(); stream_it->second.saveChecksums(checksums_data); }, {}); if (is_cancelled()) return {}; } if (!rows) throw Exception("No columns in data part", ErrorCodes::EMPTY_LIST_OF_COLUMNS_PASSED); if (!primary_key_data_types.empty()) { size_t expected_marks = (*rows - 1) / index_granularity + 1; if (expected_marks != marks_in_primary_key) throw Exception("Size of primary key doesn't match expected number of marks." " Number of rows in columns: " + toString(*rows) + ", index_granularity: " + toString(index_granularity) + ", expected number of marks: " + toString(expected_marks) + ", size of primary key: " + toString(marks_in_primary_key), ErrorCodes::CORRUPTED_DATA); } if (require_checksums || !checksums_txt.files.empty()) checksums_txt.checkEqual(checksums_data, true); return checksums_data; } }