#include #include #include #include namespace DB { namespace ErrorCodes { extern const int LOGICAL_ERROR; } namespace { constexpr auto DATA_FILE_EXTENSION = ".bin"; } namespace { /// Get granules for block using index_granularity Granules getGranulesToWrite(const MergeTreeIndexGranularity & index_granularity, size_t block_rows, size_t current_mark, size_t rows_written_in_last_mark) { if (current_mark >= index_granularity.getMarksCount()) throw Exception(ErrorCodes::LOGICAL_ERROR, "Request to get granules from mark {} but index granularity size is {}", current_mark, index_granularity.getMarksCount()); Granules result; size_t current_row = 0; /// When our last mark is not finished yet and we have to write in rows into it if (rows_written_in_last_mark > 0) { size_t rows_left_in_last_mark = index_granularity.getMarkRows(current_mark) - rows_written_in_last_mark; size_t rows_left_in_block = block_rows - current_row; result.emplace_back(Granule{ .start_row = current_row, .granularity_rows = rows_left_in_last_mark, .block_rows = std::min(rows_left_in_block, rows_left_in_last_mark), .mark_number = current_mark, .mark_on_start = false, /// Don't mark this granule because we have already marked it }); current_row += rows_left_in_last_mark; current_mark++; } /// Calculating normal granules for block while (current_row < block_rows) { size_t expected_rows_in_mark = index_granularity.getMarkRows(current_mark); size_t rows_left_in_block = block_rows - current_row; /// If we have less rows in block than expected in granularity /// save incomplete granule result.emplace_back(Granule{ .start_row = current_row, .granularity_rows = expected_rows_in_mark, .block_rows = std::min(rows_left_in_block, expected_rows_in_mark), .mark_number = current_mark, .mark_on_start = true, }); current_row += expected_rows_in_mark; current_mark++; } return result; } } MergeTreeDataPartWriterWide::MergeTreeDataPartWriterWide( const MergeTreeData::DataPartPtr & data_part_, const NamesAndTypesList & columns_list_, const StorageMetadataPtr & metadata_snapshot_, const std::vector & indices_to_recalc_, const String & marks_file_extension_, const CompressionCodecPtr & default_codec_, const MergeTreeWriterSettings & settings_, const MergeTreeIndexGranularity & index_granularity_) : MergeTreeDataPartWriterOnDisk(data_part_, columns_list_, metadata_snapshot_, indices_to_recalc_, marks_file_extension_, default_codec_, settings_, index_granularity_) { const auto & columns = metadata_snapshot->getColumns(); for (const auto & it : columns_list) addStreams(it.name, *it.type, columns.getCodecDescOrDefault(it.name, default_codec), settings.estimated_size); } void MergeTreeDataPartWriterWide::addStreams( const String & name, const IDataType & type, const ASTPtr & effective_codec_desc, size_t estimated_size) { IDataType::StreamCallback callback = [&] (const IDataType::SubstreamPath & substream_path, const IDataType & substream_type) { String stream_name = IDataType::getFileNameForStream(name, substream_path); /// Shared offsets for Nested type. if (column_streams.count(stream_name)) return; CompressionCodecPtr compression_codec; /// If we can use special codec then just get it if (IDataType::isSpecialCompressionAllowed(substream_path)) compression_codec = CompressionCodecFactory::instance().get(effective_codec_desc, &substream_type, default_codec); else /// otherwise return only generic codecs and don't use info about the data_type compression_codec = CompressionCodecFactory::instance().get(effective_codec_desc, nullptr, default_codec, true); column_streams[stream_name] = std::make_unique( stream_name, data_part->volume->getDisk(), part_path + stream_name, DATA_FILE_EXTENSION, part_path + stream_name, marks_file_extension, compression_codec, settings.max_compress_block_size, estimated_size, settings.aio_threshold); }; IDataType::SubstreamPath stream_path; type.enumerateStreams(callback, stream_path); } IDataType::OutputStreamGetter MergeTreeDataPartWriterWide::createStreamGetter( const String & name, WrittenOffsetColumns & offset_columns) const { return [&, this] (const IDataType::SubstreamPath & substream_path) -> WriteBuffer * { bool is_offsets = !substream_path.empty() && substream_path.back().type == IDataType::Substream::ArraySizes; String stream_name = IDataType::getFileNameForStream(name, substream_path); /// Don't write offsets more than one time for Nested type. if (is_offsets && offset_columns.count(stream_name)) return nullptr; return &column_streams.at(stream_name)->compressed; }; } void MergeTreeDataPartWriterWide::shiftCurrentMark(const Granules & granules_written) { auto last_granule = granules_written.back(); /// If we didn't finished last granule than we will continue to write it from new block if (!last_granule.isCompleted()) { /// Shift forward except last granule setCurrentMark(getCurrentMark() + granules_written.size() - 1); bool still_in_the_same_granule = granules_written.size() == 1; /// We wrote whole block in the same granule, but didn't finished it. /// So add written rows to rows written in last_mark if (still_in_the_same_granule) rows_written_in_last_mark += last_granule.block_rows; else rows_written_in_last_mark = last_granule.block_rows; } else { setCurrentMark(getCurrentMark() + granules_written.size()); rows_written_in_last_mark = 0; } } void MergeTreeDataPartWriterWide::write(const Block & block, const IColumn::Permutation * permutation) { /// Fill index granularity for this block /// if it's unknown (in case of insert data or horizontal merge, /// but not in case of vertical merge) if (compute_granularity) { size_t index_granularity_for_block = computeIndexGranularity(block); if (rows_written_in_last_mark > 0) { size_t rows_left_in_last_mark = index_granularity.getMarkRows(getCurrentMark()) - rows_written_in_last_mark; if (rows_left_in_last_mark > index_granularity_for_block) adjustLastMarkAndFlushToDisk(); } fillIndexGranularity(index_granularity_for_block, block.rows()); } auto granules_to_write = getGranulesToWrite(index_granularity, block.rows(), getCurrentMark(), rows_written_in_last_mark); auto offset_columns = written_offset_columns ? *written_offset_columns : WrittenOffsetColumns{}; Block primary_key_block; if (settings.rewrite_primary_key) primary_key_block = getBlockAndPermute(block, metadata_snapshot->getPrimaryKeyColumns(), permutation); Block skip_indexes_block = getBlockAndPermute(block, getSkipIndicesColumns(), permutation); auto it = columns_list.begin(); for (size_t i = 0; i < columns_list.size(); ++i, ++it) { const ColumnWithTypeAndName & column = block.getByName(it->name); if (permutation) { if (primary_key_block.has(it->name)) { const auto & primary_column = *primary_key_block.getByName(it->name).column; writeColumn(column.name, *column.type, primary_column, offset_columns, granules_to_write); } else if (skip_indexes_block.has(it->name)) { const auto & index_column = *skip_indexes_block.getByName(it->name).column; writeColumn(column.name, *column.type, index_column, offset_columns, granules_to_write); } else { /// We rearrange the columns that are not included in the primary key here; Then the result is released - to save RAM. ColumnPtr permuted_column = column.column->permute(*permutation, 0); writeColumn(column.name, *column.type, *permuted_column, offset_columns, granules_to_write); } } else { writeColumn(column.name, *column.type, *column.column, offset_columns, granules_to_write); } } if (settings.rewrite_primary_key) calculateAndSerializePrimaryIndex(primary_key_block, granules_to_write); calculateAndSerializeSkipIndices(skip_indexes_block, granules_to_write); shiftCurrentMark(granules_to_write); } void MergeTreeDataPartWriterWide::writeSingleMark( const String & name, const IDataType & type, WrittenOffsetColumns & offset_columns, size_t number_of_rows, DB::IDataType::SubstreamPath & path) { StreamsWithMarks marks = getCurrentMarksForColumn(name, type, offset_columns, path); for (const auto & mark : marks) flushMarkToFile(mark, number_of_rows); } void MergeTreeDataPartWriterWide::flushMarkToFile(const StreamNameAndMark & stream_with_mark, size_t rows_in_mark) { Stream & stream = *column_streams[stream_with_mark.stream_name]; writeIntBinary(stream_with_mark.mark.offset_in_compressed_file, stream.marks); writeIntBinary(stream_with_mark.mark.offset_in_decompressed_block, stream.marks); if (settings.can_use_adaptive_granularity) writeIntBinary(rows_in_mark, stream.marks); } StreamsWithMarks MergeTreeDataPartWriterWide::getCurrentMarksForColumn( const String & name, const IDataType & type, WrittenOffsetColumns & offset_columns, DB::IDataType::SubstreamPath & path) { StreamsWithMarks result; type.enumerateStreams([&] (const IDataType::SubstreamPath & substream_path, const IDataType & /* substream_type */) { bool is_offsets = !substream_path.empty() && substream_path.back().type == IDataType::Substream::ArraySizes; String stream_name = IDataType::getFileNameForStream(name, substream_path); /// Don't write offsets more than one time for Nested type. if (is_offsets && offset_columns.count(stream_name)) return; Stream & stream = *column_streams[stream_name]; /// There could already be enough data to compress into the new block. if (stream.compressed.offset() >= settings.min_compress_block_size) stream.compressed.next(); StreamNameAndMark stream_with_mark; stream_with_mark.stream_name = stream_name; stream_with_mark.mark.offset_in_compressed_file = stream.plain_hashing.count(); stream_with_mark.mark.offset_in_decompressed_block = stream.compressed.offset(); result.push_back(stream_with_mark); }, path); return result; } void MergeTreeDataPartWriterWide::writeSingleGranule( const String & name, const IDataType & type, const IColumn & column, WrittenOffsetColumns & offset_columns, IDataType::SerializeBinaryBulkStatePtr & serialization_state, IDataType::SerializeBinaryBulkSettings & serialize_settings, const Granule & granule) { type.serializeBinaryBulkWithMultipleStreams(column, granule.start_row, granule.granularity_rows, serialize_settings, serialization_state); /// So that instead of the marks pointing to the end of the compressed block, there were marks pointing to the beginning of the next one. type.enumerateStreams([&] (const IDataType::SubstreamPath & substream_path, const IDataType & /* substream_type */) { bool is_offsets = !substream_path.empty() && substream_path.back().type == IDataType::Substream::ArraySizes; String stream_name = IDataType::getFileNameForStream(name, substream_path); /// Don't write offsets more than one time for Nested type. if (is_offsets && offset_columns.count(stream_name)) return; column_streams[stream_name]->compressed.nextIfAtEnd(); }, serialize_settings.path); } /// Column must not be empty. (column.size() !== 0) void MergeTreeDataPartWriterWide::writeColumn( const String & name, const IDataType & type, const IColumn & column, WrittenOffsetColumns & offset_columns, const Granules & granules) { if (granules.empty()) throw Exception(ErrorCodes::LOGICAL_ERROR, "Empty granules for column {}, current mark {}", backQuoteIfNeed(name), getCurrentMark()); auto [it, inserted] = serialization_states.emplace(name, nullptr); if (inserted) { IDataType::SerializeBinaryBulkSettings serialize_settings; serialize_settings.getter = createStreamGetter(name, offset_columns); type.serializeBinaryBulkStatePrefix(serialize_settings, it->second); } const auto & global_settings = storage.global_context.getSettingsRef(); IDataType::SerializeBinaryBulkSettings serialize_settings; serialize_settings.getter = createStreamGetter(name, offset_columns); serialize_settings.low_cardinality_max_dictionary_size = global_settings.low_cardinality_max_dictionary_size; serialize_settings.low_cardinality_use_single_dictionary_for_part = global_settings.low_cardinality_use_single_dictionary_for_part != 0; for (const auto & granule : granules) { if (granule.granularity_rows > 0) data_written = true; if (granule.mark_on_start) { if (last_non_written_marks.count(name)) throw Exception(ErrorCodes::LOGICAL_ERROR, "We have to add new mark for column, but already have non written mark. Current mark {}, total marks {}, offset {}", getCurrentMark(), index_granularity.getMarksCount(), rows_written_in_last_mark); last_non_written_marks[name] = getCurrentMarksForColumn(name, type, offset_columns, serialize_settings.path); } writeSingleGranule( name, type, column, offset_columns, it->second, serialize_settings, granule ); if (granule.isCompleted()) { auto it = last_non_written_marks.find(name); if (it == last_non_written_marks.end()) throw Exception(ErrorCodes::LOGICAL_ERROR, "No mark was saved for incomplete granule for column {}", backQuoteIfNeed(name)); for (const auto & mark : it->second) flushMarkToFile(mark, index_granularity.getMarkRows(granule.mark_number)); last_non_written_marks.erase(it); } } type.enumerateStreams([&] (const IDataType::SubstreamPath & substream_path, const IDataType & /* substream_type */) { bool is_offsets = !substream_path.empty() && substream_path.back().type == IDataType::Substream::ArraySizes; if (is_offsets) { String stream_name = IDataType::getFileNameForStream(name, substream_path); offset_columns.insert(stream_name); } }, serialize_settings.path); } void MergeTreeDataPartWriterWide::validateColumnOfFixedSize(const String & name, const IDataType & type) { if (!type.isValueRepresentedByNumber() || type.haveSubtypes()) throw Exception(ErrorCodes::LOGICAL_ERROR, "Cannot validate column of non fixed type {}", type.getName()); auto disk = data_part->volume->getDisk(); String mrk_path = fullPath(disk, part_path + name + marks_file_extension); String bin_path = fullPath(disk, part_path + name + DATA_FILE_EXTENSION); DB::ReadBufferFromFile mrk_in(mrk_path); DB::CompressedReadBufferFromFile bin_in(bin_path, 0, 0, 0); bool must_be_last = false; UInt64 offset_in_compressed_file = 0; UInt64 offset_in_decompressed_block = 0; UInt64 index_granularity_rows = 0; size_t mark_num; for (mark_num = 0; !mrk_in.eof(); ++mark_num) { if (mark_num > index_granularity.getMarksCount()) throw Exception(ErrorCodes::LOGICAL_ERROR, "Incorrect number of marks in memory {}, on disk (at least) {}", index_granularity.getMarksCount(), mark_num + 1); DB::readBinary(offset_in_compressed_file, mrk_in); DB::readBinary(offset_in_decompressed_block, mrk_in); if (settings.can_use_adaptive_granularity) DB::readBinary(index_granularity_rows, mrk_in); else index_granularity_rows = storage.getSettings()->index_granularity; if (must_be_last) { if (index_granularity_rows != 0) throw Exception(ErrorCodes::LOGICAL_ERROR, "We ran out of binary data but still have non empty mark #{} with rows number {}", mark_num, index_granularity_rows); if (!mrk_in.eof()) throw Exception(ErrorCodes::LOGICAL_ERROR, "Mark #{} must be last, but we still have some to read", mark_num); break; } if (index_granularity_rows == 0) { auto column = type.createColumn(); type.deserializeBinaryBulk(*column, bin_in, 1000000000, 0.0); throw Exception(ErrorCodes::LOGICAL_ERROR, "Still have {} rows in bin stream, last mark #{} index granularity size {}, last rows {}", column->size(), mark_num, index_granularity.getMarksCount(), index_granularity_rows); } if (index_granularity_rows != index_granularity.getMarkRows(mark_num)) throw Exception( ErrorCodes::LOGICAL_ERROR, "Incorrect mark rows for mark #{} (compressed offset {}, decompressed offset {}), in-memory {}, on disk {}, total marks {}", mark_num, offset_in_compressed_file, offset_in_decompressed_block, index_granularity.getMarkRows(mark_num), index_granularity_rows, index_granularity.getMarksCount()); auto column = type.createColumn(); type.deserializeBinaryBulk(*column, bin_in, index_granularity_rows, 0.0); if (bin_in.eof()) { must_be_last = true; } /// Now they must be equal if (column->size() != index_granularity_rows) { throw Exception( ErrorCodes::LOGICAL_ERROR, "Incorrect mark rows for mark #{} (compressed offset {}, decompressed offset {}), actually in bin file {}, in mrk file {}", mark_num, offset_in_compressed_file, offset_in_decompressed_block, column->size(), index_granularity.getMarkRows(mark_num)); } } if (!mrk_in.eof()) throw Exception(ErrorCodes::LOGICAL_ERROR, "Still have something in marks stream, last mark #{} index granularity size {}, last rows {}", mark_num, index_granularity.getMarksCount(), index_granularity_rows); if (!bin_in.eof()) { auto column = type.createColumn(); type.deserializeBinaryBulk(*column, bin_in, 1000000000, 0.0); throw Exception(ErrorCodes::LOGICAL_ERROR, "Still have {} rows in bin stream, last mark #{} index granularity size {}, last rows {}", column->size(), mark_num, index_granularity.getMarksCount(), index_granularity_rows); } } void MergeTreeDataPartWriterWide::finishDataSerialization(IMergeTreeDataPart::Checksums & checksums, bool sync) { const auto & global_settings = storage.global_context.getSettingsRef(); IDataType::SerializeBinaryBulkSettings serialize_settings; serialize_settings.low_cardinality_max_dictionary_size = global_settings.low_cardinality_max_dictionary_size; serialize_settings.low_cardinality_use_single_dictionary_for_part = global_settings.low_cardinality_use_single_dictionary_for_part != 0; WrittenOffsetColumns offset_columns; if (rows_written_in_last_mark > 0) adjustLastMarkAndFlushToDisk(); bool write_final_mark = (with_final_mark && data_written); { auto it = columns_list.begin(); for (size_t i = 0; i < columns_list.size(); ++i, ++it) { if (!serialization_states.empty()) { serialize_settings.getter = createStreamGetter(it->name, written_offset_columns ? *written_offset_columns : offset_columns); it->type->serializeBinaryBulkStateSuffix(serialize_settings, serialization_states[it->name]); } if (write_final_mark) writeFinalMark(it->name, it->type, offset_columns, serialize_settings.path); } } for (auto & stream : column_streams) { stream.second->finalize(); stream.second->addToChecksums(checksums); if (sync) stream.second->sync(); } column_streams.clear(); serialization_states.clear(); #ifndef NDEBUG for (const auto & column : columns_list) { if (column.type->isValueRepresentedByNumber() && !column.type->haveSubtypes()) validateColumnOfFixedSize(column.name, *column.type); } #endif } void MergeTreeDataPartWriterWide::finish(IMergeTreeDataPart::Checksums & checksums, bool sync) { finishDataSerialization(checksums, sync); if (settings.rewrite_primary_key) finishPrimaryIndexSerialization(checksums, sync); finishSkipIndicesSerialization(checksums, sync); } void MergeTreeDataPartWriterWide::writeFinalMark( const std::string & column_name, const DataTypePtr column_type, WrittenOffsetColumns & offset_columns, DB::IDataType::SubstreamPath & path) { writeSingleMark(column_name, *column_type, offset_columns, 0, path); /// Memoize information about offsets column_type->enumerateStreams([&] (const IDataType::SubstreamPath & substream_path, const IDataType & /* substream_type */) { bool is_offsets = !substream_path.empty() && substream_path.back().type == IDataType::Substream::ArraySizes; if (is_offsets) { String stream_name = IDataType::getFileNameForStream(column_name, substream_path); offset_columns.insert(stream_name); } }, path); } static void fillIndexGranularityImpl( MergeTreeIndexGranularity & index_granularity, size_t index_offset, size_t index_granularity_for_block, size_t rows_in_block) { for (size_t current_row = index_offset; current_row < rows_in_block; current_row += index_granularity_for_block) index_granularity.appendMark(index_granularity_for_block); } void MergeTreeDataPartWriterWide::fillIndexGranularity(size_t index_granularity_for_block, size_t rows_in_block) { if (getCurrentMark() < index_granularity.getMarksCount() && getCurrentMark() != index_granularity.getMarksCount() - 1) throw Exception(ErrorCodes::LOGICAL_ERROR, "Trying to add marks, while current mark {}, but total marks {}", getCurrentMark(), index_granularity.getMarksCount()); size_t index_offset = 0; if (rows_written_in_last_mark != 0) index_offset = index_granularity.getLastMarkRows() - rows_written_in_last_mark; fillIndexGranularityImpl( index_granularity, index_offset, index_granularity_for_block, rows_in_block); } void MergeTreeDataPartWriterWide::adjustLastMarkAndFlushToDisk() { if (getCurrentMark() != index_granularity.getMarksCount() - 1) throw Exception(ErrorCodes::LOGICAL_ERROR, "Non last mark {} having rows offset {}, total marks {}", getCurrentMark(), rows_written_in_last_mark, index_granularity.getMarksCount()); if (last_non_written_marks.empty()) throw Exception(ErrorCodes::LOGICAL_ERROR, "No saved marks for last mark {} having rows offset {}, total marks {}", getCurrentMark(), rows_written_in_last_mark, index_granularity.getMarksCount()); index_granularity.popMark(); index_granularity.appendMark(rows_written_in_last_mark); for (const auto & [name, marks] : last_non_written_marks) for (const auto & mark : marks) flushMarkToFile(mark, index_granularity.getMarkRows(getCurrentMark())); last_non_written_marks.clear(); for (size_t i = 0; i < skip_indices.size(); ++i) ++skip_index_accumulated_marks[i]; setCurrentMark(getCurrentMark() + 1); rows_written_in_last_mark = 0; } }