ClickHouse/src/Storages/StorageLog.cpp
2022-07-13 20:36:18 +00:00

1127 lines
37 KiB
C++

#include <Storages/StorageLog.h>
#include <Storages/StorageFactory.h>
#include <Common/Exception.h>
#include <Common/StringUtils/StringUtils.h>
#include <Common/typeid_cast.h>
#include <Interpreters/evaluateConstantExpression.h>
#include <IO/LimitReadBuffer.h>
#include <IO/ReadBufferFromFileBase.h>
#include <IO/ReadHelpers.h>
#include <IO/WriteBufferFromFileBase.h>
#include <IO/WriteHelpers.h>
#include <IO/copyData.h>
#include <Compression/CompressedReadBuffer.h>
#include <Compression/CompressedWriteBuffer.h>
#include <DataTypes/NestedUtils.h>
#include <Interpreters/Context.h>
#include "StorageLogSettings.h"
#include <Processors/Sources/NullSource.h>
#include <Processors/ISource.h>
#include <QueryPipeline/Pipe.h>
#include <Processors/Sinks/SinkToStorage.h>
#include <Backups/BackupEntriesCollector.h>
#include <Backups/BackupEntryFromAppendOnlyFile.h>
#include <Backups/BackupEntryFromSmallFile.h>
#include <Backups/IBackup.h>
#include <Backups/RestorerFromBackup.h>
#include <Disks/TemporaryFileOnDisk.h>
#include <cassert>
#include <chrono>
#define DBMS_STORAGE_LOG_DATA_FILE_EXTENSION ".bin"
#define DBMS_STORAGE_LOG_MARKS_FILE_NAME "__marks.mrk"
namespace DB
{
namespace ErrorCodes
{
extern const int TIMEOUT_EXCEEDED;
extern const int LOGICAL_ERROR;
extern const int DUPLICATE_COLUMN;
extern const int SIZES_OF_MARKS_FILES_ARE_INCONSISTENT;
extern const int NUMBER_OF_ARGUMENTS_DOESNT_MATCH;
extern const int INCORRECT_FILE_NAME;
extern const int CANNOT_RESTORE_TABLE;
}
/// NOTE: The lock `StorageLog::rwlock` is NOT kept locked while reading,
/// because we read ranges of data that do not change.
class LogSource final : public ISource
{
public:
static Block getHeader(const NamesAndTypesList & columns)
{
Block res;
for (const auto & name_type : columns)
res.insert({ name_type.type->createColumn(), name_type.type, name_type.name });
return res;
}
LogSource(
size_t block_size_,
const NamesAndTypesList & columns_,
const StorageLog & storage_,
size_t rows_limit_,
const std::vector<size_t> & offsets_,
const std::vector<size_t> & file_sizes_,
bool limited_by_file_sizes_,
ReadSettings read_settings_)
: ISource(getHeader(columns_))
, block_size(block_size_)
, columns(columns_)
, storage(storage_)
, rows_limit(rows_limit_)
, offsets(offsets_)
, file_sizes(file_sizes_)
, limited_by_file_sizes(limited_by_file_sizes_)
, read_settings(std::move(read_settings_))
{
}
String getName() const override { return "Log"; }
protected:
Chunk generate() override;
private:
const size_t block_size;
const NamesAndTypesList columns;
const StorageLog & storage;
const size_t rows_limit; /// The maximum number of rows that can be read
size_t rows_read = 0;
bool is_finished = false;
const std::vector<size_t> offsets;
const std::vector<size_t> file_sizes;
const bool limited_by_file_sizes;
const ReadSettings read_settings;
struct Stream
{
Stream(const DiskPtr & disk, const String & data_path, size_t offset, size_t file_size, bool limited_by_file_size, ReadSettings read_settings_)
{
plain = disk->readFile(data_path, read_settings_.adjustBufferSize(file_size));
if (offset)
plain->seek(offset, SEEK_SET);
if (limited_by_file_size)
{
limited.emplace(*plain, file_size - offset, false);
compressed.emplace(*limited);
}
else
compressed.emplace(*plain);
}
std::unique_ptr<ReadBufferFromFileBase> plain;
std::optional<LimitReadBuffer> limited;
std::optional<CompressedReadBuffer> compressed;
};
using FileStreams = std::map<String, Stream>;
FileStreams streams;
using DeserializeState = ISerialization::DeserializeBinaryBulkStatePtr;
using DeserializeStates = std::map<String, DeserializeState>;
DeserializeStates deserialize_states;
void readData(const NameAndTypePair & name_and_type, ColumnPtr & column, size_t max_rows_to_read, ISerialization::SubstreamsCache & cache);
bool isFinished();
};
Chunk LogSource::generate()
{
if (isFinished())
{
/// Close the files (before destroying the object).
/// When many sources are created, but simultaneously reading only a few of them,
/// buffers don't waste memory.
streams.clear();
return {};
}
/// How many rows to read for the next block.
size_t max_rows_to_read = std::min(block_size, rows_limit - rows_read);
std::unordered_map<String, ISerialization::SubstreamsCache> caches;
Block res;
for (const auto & name_type : columns)
{
ColumnPtr column;
try
{
column = name_type.type->createColumn();
readData(name_type, column, max_rows_to_read, caches[name_type.getNameInStorage()]);
}
catch (Exception & e)
{
e.addMessage("while reading column " + name_type.name + " at " + fullPath(storage.disk, storage.table_path));
throw;
}
if (!column->empty())
res.insert(ColumnWithTypeAndName(column, name_type.type, name_type.name));
}
if (res)
rows_read += res.rows();
if (!res)
is_finished = true;
if (isFinished())
{
/// Close the files (before destroying the object).
/// When many sources are created, but simultaneously reading only a few of them,
/// buffers don't waste memory.
streams.clear();
}
UInt64 num_rows = res.rows();
return Chunk(res.getColumns(), num_rows);
}
void LogSource::readData(const NameAndTypePair & name_and_type, ColumnPtr & column,
size_t max_rows_to_read, ISerialization::SubstreamsCache & cache)
{
ISerialization::DeserializeBinaryBulkSettings settings; /// TODO Use avg_value_size_hint.
const auto & [name, type] = name_and_type;
auto serialization = IDataType::getSerialization(name_and_type);
auto create_stream_getter = [&](bool stream_for_prefix)
{
return [&, stream_for_prefix] (const ISerialization::SubstreamPath & path) -> ReadBuffer * //-V1047
{
if (cache.contains(ISerialization::getSubcolumnNameForStream(path)))
return nullptr;
String data_file_name = ISerialization::getFileNameForStream(name_and_type, path);
const auto & data_file_it = storage.data_files_by_names.find(data_file_name);
if (data_file_it == storage.data_files_by_names.end())
throw Exception("Logical error: no information about file " + data_file_name + " in StorageLog", ErrorCodes::LOGICAL_ERROR);
const auto & data_file = *data_file_it->second;
size_t offset = stream_for_prefix ? 0 : offsets[data_file.index];
size_t file_size = file_sizes[data_file.index];
auto it = streams.try_emplace(data_file_name, storage.disk, data_file.path, offset, file_size, limited_by_file_sizes, read_settings).first;
return &it->second.compressed.value();
};
};
if (!deserialize_states.contains(name))
{
settings.getter = create_stream_getter(true);
serialization->deserializeBinaryBulkStatePrefix(settings, deserialize_states[name]);
}
settings.getter = create_stream_getter(false);
serialization->deserializeBinaryBulkWithMultipleStreams(column, max_rows_to_read, settings, deserialize_states[name], &cache);
}
bool LogSource::isFinished()
{
if (is_finished)
return true;
/// Check for row limit.
if (rows_read == rows_limit)
{
is_finished = true;
return true;
}
if (limited_by_file_sizes)
{
/// Check for EOF.
if (!streams.empty() && streams.begin()->second.compressed->eof())
{
is_finished = true;
return true;
}
}
return false;
}
/// NOTE: The lock `StorageLog::rwlock` is kept locked in exclusive mode while writing.
class LogSink final : public SinkToStorage
{
public:
using WriteLock = std::unique_lock<std::shared_timed_mutex>;
explicit LogSink(
StorageLog & storage_, const StorageMetadataPtr & metadata_snapshot_, WriteLock && lock_)
: SinkToStorage(metadata_snapshot_->getSampleBlock())
, storage(storage_)
, metadata_snapshot(metadata_snapshot_)
, lock(std::move(lock_))
{
if (!lock)
throw Exception("Lock timeout exceeded", ErrorCodes::TIMEOUT_EXCEEDED);
/// Ensure that marks are loaded because we're going to update them.
storage.loadMarks(lock);
/// If there were no files, save zero file sizes to be able to rollback in case of error.
storage.saveFileSizes(lock);
}
String getName() const override { return "LogSink"; }
~LogSink() override
{
try
{
if (!done)
{
/// Rollback partial writes.
/// No more writing.
streams.clear();
/// Truncate files to the older sizes.
storage.file_checker.repair();
/// Remove excessive marks.
storage.removeUnsavedMarks(lock);
}
}
catch (...)
{
tryLogCurrentException(__PRETTY_FUNCTION__);
}
}
void consume(Chunk chunk) override;
void onFinish() override;
private:
StorageLog & storage;
StorageMetadataPtr metadata_snapshot;
WriteLock lock;
bool done = false;
struct Stream
{
Stream(const DiskPtr & disk, const String & data_path, size_t initial_data_size, CompressionCodecPtr codec, size_t max_compress_block_size) :
plain(disk->writeFile(data_path, max_compress_block_size, WriteMode::Append)),
compressed(*plain, std::move(codec), max_compress_block_size),
plain_offset(initial_data_size)
{
}
std::unique_ptr<WriteBuffer> plain;
CompressedWriteBuffer compressed;
/// How many bytes were in the file at the time the Stream was created.
size_t plain_offset;
/// Used to not write shared offsets of columns for nested structures multiple times.
bool written = false;
void finalize()
{
compressed.next();
plain->next();
}
};
using FileStreams = std::map<String, Stream>;
FileStreams streams;
using SerializeState = ISerialization::SerializeBinaryBulkStatePtr;
using SerializeStates = std::map<String, SerializeState>;
SerializeStates serialize_states;
ISerialization::OutputStreamGetter createStreamGetter(const NameAndTypePair & name_and_type);
void writeData(const NameAndTypePair & name_and_type, const IColumn & column);
};
void LogSink::consume(Chunk chunk)
{
auto block = getHeader().cloneWithColumns(chunk.detachColumns());
metadata_snapshot->check(block, true);
for (auto & stream : streams | boost::adaptors::map_values)
stream.written = false;
for (size_t i = 0; i < block.columns(); ++i)
{
const ColumnWithTypeAndName & column = block.safeGetByPosition(i);
writeData(NameAndTypePair(column.name, column.type), *column.column);
}
}
void LogSink::onFinish()
{
if (done)
return;
for (auto & stream : streams | boost::adaptors::map_values)
stream.written = false;
ISerialization::SerializeBinaryBulkSettings settings;
for (const auto & column : getHeader())
{
auto it = serialize_states.find(column.name);
if (it != serialize_states.end())
{
settings.getter = createStreamGetter(NameAndTypePair(column.name, column.type));
auto serialization = column.type->getDefaultSerialization();
serialization->serializeBinaryBulkStateSuffix(settings, it->second);
}
}
/// Finish write.
for (auto & stream : streams | boost::adaptors::map_values)
stream.finalize();
streams.clear();
storage.saveMarks(lock);
storage.saveFileSizes(lock);
storage.updateTotalRows(lock);
done = true;
/// unlock should be done from the same thread as lock, and dtor may be
/// called from different thread, so it should be done here (at least in
/// case of no exceptions occurred)
lock.unlock();
}
ISerialization::OutputStreamGetter LogSink::createStreamGetter(const NameAndTypePair & name_and_type)
{
return [&] (const ISerialization::SubstreamPath & path) -> WriteBuffer *
{
String data_file_name = ISerialization::getFileNameForStream(name_and_type, path);
auto it = streams.find(data_file_name);
if (it == streams.end())
throw Exception("Logical error: stream was not created when writing data in LogSink",
ErrorCodes::LOGICAL_ERROR);
Stream & stream = it->second;
if (stream.written)
return nullptr;
return &stream.compressed;
};
}
void LogSink::writeData(const NameAndTypePair & name_and_type, const IColumn & column)
{
ISerialization::SerializeBinaryBulkSettings settings;
const auto & [name, type] = name_and_type;
auto serialization = type->getDefaultSerialization();
serialization->enumerateStreams([&] (const ISerialization::SubstreamPath & path)
{
String data_file_name = ISerialization::getFileNameForStream(name_and_type, path);
auto it = streams.find(data_file_name);
if (it == streams.end())
{
const auto & data_file_it = storage.data_files_by_names.find(data_file_name);
if (data_file_it == storage.data_files_by_names.end())
throw Exception("Logical error: no information about file " + data_file_name + " in StorageLog", ErrorCodes::LOGICAL_ERROR);
const auto & data_file = *data_file_it->second;
const auto & columns = metadata_snapshot->getColumns();
it = streams.try_emplace(data_file.name, storage.disk, data_file.path,
storage.file_checker.getFileSize(data_file.path),
columns.getCodecOrDefault(name_and_type.name),
storage.max_compress_block_size).first;
}
auto & stream = it->second;
if (stream.written)
return;
});
settings.getter = createStreamGetter(name_and_type);
if (!serialize_states.contains(name))
serialization->serializeBinaryBulkStatePrefix(settings, serialize_states[name]);
if (storage.use_marks_file)
{
serialization->enumerateStreams([&] (const ISerialization::SubstreamPath & path)
{
String data_file_name = ISerialization::getFileNameForStream(name_and_type, path);
const auto & stream = streams.at(data_file_name);
if (stream.written)
return;
auto & data_file = *storage.data_files_by_names.at(data_file_name);
auto & marks = data_file.marks;
size_t prev_num_rows = marks.empty() ? 0 : marks.back().rows;
auto & mark = marks.emplace_back();
mark.rows = prev_num_rows + column.size();
mark.offset = stream.plain_offset + stream.plain->count();
});
}
serialization->serializeBinaryBulkWithMultipleStreams(column, 0, 0, settings, serialize_states[name]);
serialization->enumerateStreams([&] (const ISerialization::SubstreamPath & path)
{
String data_file_name = ISerialization::getFileNameForStream(name_and_type, path);
auto & stream = streams.at(data_file_name);
if (stream.written)
return;
stream.written = true;
stream.compressed.next();
});
}
void StorageLog::Mark::write(WriteBuffer & out) const
{
writeIntBinary(rows, out);
writeIntBinary(offset, out);
}
void StorageLog::Mark::read(ReadBuffer & in)
{
readIntBinary(rows, in);
readIntBinary(offset, in);
}
namespace
{
/// NOTE: We extract the number of rows from the marks.
/// For normal columns, the number of rows in the block is specified in the marks.
/// For array columns and nested structures, there are more than one group of marks that correspond to different files
/// - for elements (file name.bin) - the total number of array elements in the block is specified,
/// - for array sizes (file name.size0.bin) - the number of rows (the whole arrays themselves) in the block is specified.
/// So for Array data type, first stream is array sizes; and number of array sizes is the number of arrays.
/// Thus we assume we can always get the real number of rows from the first column.
constexpr size_t INDEX_WITH_REAL_ROW_COUNT = 0;
}
StorageLog::~StorageLog() = default;
StorageLog::StorageLog(
const String & engine_name_,
DiskPtr disk_,
const String & relative_path_,
const StorageID & table_id_,
const ColumnsDescription & columns_,
const ConstraintsDescription & constraints_,
const String & comment,
bool attach,
ContextMutablePtr context_)
: IStorage(table_id_)
, WithMutableContext(context_)
, engine_name(engine_name_)
, disk(std::move(disk_))
, table_path(relative_path_)
, use_marks_file(engine_name == "Log")
, marks_file_path(table_path + DBMS_STORAGE_LOG_MARKS_FILE_NAME)
, file_checker(disk, table_path + "sizes.json")
, max_compress_block_size(context_->getSettingsRef().max_compress_block_size)
{
StorageInMemoryMetadata storage_metadata;
storage_metadata.setColumns(columns_);
storage_metadata.setConstraints(constraints_);
storage_metadata.setComment(comment);
setInMemoryMetadata(storage_metadata);
if (relative_path_.empty())
throw Exception("Storage " + getName() + " requires data path", ErrorCodes::INCORRECT_FILE_NAME);
/// Enumerate data files.
for (const auto & column : storage_metadata.getColumns().getAllPhysical())
addDataFiles(column);
/// Ensure the file checker is initialized.
if (file_checker.empty())
{
for (const auto & data_file : data_files)
file_checker.setEmpty(data_file.path);
if (use_marks_file)
file_checker.setEmpty(marks_file_path);
}
if (!attach)
{
/// create directories if they do not exist
disk->createDirectories(table_path);
}
else
{
try
{
file_checker.repair();
}
catch (...)
{
tryLogCurrentException(__PRETTY_FUNCTION__);
}
}
total_bytes = file_checker.getTotalSize();
}
void StorageLog::addDataFiles(const NameAndTypePair & column)
{
if (data_files_by_names.contains(column.name))
throw Exception("Duplicate column with name " + column.name + " in constructor of StorageLog.",
ErrorCodes::DUPLICATE_COLUMN);
ISerialization::StreamCallback stream_callback = [&] (const ISerialization::SubstreamPath & substream_path)
{
String data_file_name = ISerialization::getFileNameForStream(column, substream_path);
if (!data_files_by_names.contains(data_file_name))
{
DataFile & data_file = data_files.emplace_back();
data_file.name = data_file_name;
data_file.path = table_path + data_file_name + DBMS_STORAGE_LOG_DATA_FILE_EXTENSION;
data_file.index = num_data_files++;
data_files_by_names.emplace(data_file_name, nullptr);
}
};
column.type->getDefaultSerialization()->enumerateStreams(stream_callback);
for (auto & data_file : data_files)
data_files_by_names[data_file.name] = &data_file;
}
void StorageLog::loadMarks(std::chrono::seconds lock_timeout)
{
if (!use_marks_file || marks_loaded)
return;
/// We load marks with an exclusive lock (i.e. the write lock) because we don't want
/// a data race between two threads trying to load marks simultaneously.
WriteLock lock{rwlock, lock_timeout};
if (!lock)
throw Exception("Lock timeout exceeded", ErrorCodes::TIMEOUT_EXCEEDED);
loadMarks(lock);
}
void StorageLog::loadMarks(const WriteLock & lock /* already locked exclusively */)
{
if (!use_marks_file || marks_loaded)
return;
size_t num_marks = 0;
if (disk->exists(marks_file_path))
{
size_t file_size = disk->getFileSize(marks_file_path);
if (file_size % (num_data_files * sizeof(Mark)) != 0)
throw Exception("Size of marks file is inconsistent", ErrorCodes::SIZES_OF_MARKS_FILES_ARE_INCONSISTENT);
num_marks = file_size / (num_data_files * sizeof(Mark));
for (auto & data_file : data_files)
data_file.marks.resize(num_marks);
std::unique_ptr<ReadBuffer> marks_rb = disk->readFile(marks_file_path, ReadSettings().adjustBufferSize(32768));
for (size_t i = 0; i != num_marks; ++i)
{
for (auto & data_file : data_files)
{
Mark mark;
mark.read(*marks_rb);
data_file.marks[i] = mark;
}
}
}
marks_loaded = true;
num_marks_saved = num_marks;
/// We need marks to calculate the number of rows, and now we have the marks.
updateTotalRows(lock);
}
void StorageLog::saveMarks(const WriteLock & /* already locked for writing */)
{
if (!use_marks_file)
return;
size_t num_marks = num_data_files ? data_files[0].marks.size() : 0;
if (num_marks_saved == num_marks)
return;
for (const auto & data_file : data_files)
{
if (data_file.marks.size() != num_marks)
throw Exception("Wrong number of marks generated from block. Makes no sense.", ErrorCodes::LOGICAL_ERROR);
}
size_t start = num_marks_saved;
auto marks_stream = disk->writeFile(marks_file_path, 4096, WriteMode::Append);
for (size_t i = start; i != num_marks; ++i)
{
for (const auto & data_file : data_files)
{
const auto & mark = data_file.marks[i];
mark.write(*marks_stream);
}
}
marks_stream->next();
marks_stream->finalize();
num_marks_saved = num_marks;
}
void StorageLog::removeUnsavedMarks(const WriteLock & /* already locked for writing */)
{
if (!use_marks_file)
return;
for (auto & data_file : data_files)
{
if (data_file.marks.size() > num_marks_saved)
data_file.marks.resize(num_marks_saved);
}
}
void StorageLog::saveFileSizes(const WriteLock & /* already locked for writing */)
{
for (const auto & data_file : data_files)
file_checker.update(data_file.path);
if (use_marks_file)
file_checker.update(marks_file_path);
file_checker.save();
total_bytes = file_checker.getTotalSize();
}
void StorageLog::rename(const String & new_path_to_table_data, const StorageID & new_table_id)
{
assert(table_path != new_path_to_table_data);
{
disk->moveDirectory(table_path, new_path_to_table_data);
table_path = new_path_to_table_data;
file_checker.setPath(table_path + "sizes.json");
for (auto & data_file : data_files)
data_file.path = table_path + fileName(data_file.path);
marks_file_path = table_path + DBMS_STORAGE_LOG_MARKS_FILE_NAME;
}
renameInMemory(new_table_id);
}
static std::chrono::seconds getLockTimeout(ContextPtr context)
{
const Settings & settings = context->getSettingsRef();
Int64 lock_timeout = settings.lock_acquire_timeout.totalSeconds();
if (settings.max_execution_time.totalSeconds() != 0 && settings.max_execution_time.totalSeconds() < lock_timeout)
lock_timeout = settings.max_execution_time.totalSeconds();
return std::chrono::seconds{lock_timeout};
}
void StorageLog::truncate(const ASTPtr &, const StorageMetadataPtr &, ContextPtr local_context, TableExclusiveLockHolder &)
{
WriteLock lock{rwlock, getLockTimeout(local_context)};
if (!lock)
throw Exception("Lock timeout exceeded", ErrorCodes::TIMEOUT_EXCEEDED);
disk->clearDirectory(table_path);
for (auto & data_file : data_files)
{
data_file.marks.clear();
file_checker.setEmpty(data_file.path);
}
if (use_marks_file)
file_checker.setEmpty(marks_file_path);
marks_loaded = true;
num_marks_saved = 0;
getContext()->dropMMappedFileCache();
}
Pipe StorageLog::read(
const Names & column_names,
const StorageSnapshotPtr & storage_snapshot,
SelectQueryInfo & /*query_info*/,
ContextPtr local_context,
QueryProcessingStage::Enum /*processed_stage*/,
size_t max_block_size,
unsigned num_streams)
{
storage_snapshot->check(column_names);
auto lock_timeout = getLockTimeout(local_context);
loadMarks(lock_timeout);
ReadLock lock{rwlock, lock_timeout};
if (!lock)
throw Exception("Lock timeout exceeded", ErrorCodes::TIMEOUT_EXCEEDED);
if (!num_data_files || !file_checker.getFileSize(data_files[INDEX_WITH_REAL_ROW_COUNT].path))
return Pipe(std::make_shared<NullSource>(storage_snapshot->getSampleBlockForColumns(column_names)));
const Marks & marks_with_real_row_count = data_files[INDEX_WITH_REAL_ROW_COUNT].marks;
size_t num_marks = marks_with_real_row_count.size();
size_t max_streams = use_marks_file ? num_marks : 1;
if (num_streams > max_streams)
num_streams = max_streams;
auto options = GetColumnsOptions(GetColumnsOptions::All).withSubcolumns();
auto all_columns = storage_snapshot->getColumnsByNames(options, column_names);
all_columns = Nested::convertToSubcolumns(all_columns);
std::vector<size_t> offsets;
offsets.resize(num_data_files, 0);
std::vector<size_t> file_sizes;
file_sizes.resize(num_data_files, 0);
for (const auto & data_file : data_files)
file_sizes[data_file.index] = file_checker.getFileSize(data_file.path);
/// For TinyLog (use_marks_file == false) there is no row limit and we just read
/// the data files up to their sizes.
bool limited_by_file_sizes = !use_marks_file;
size_t row_limit = std::numeric_limits<size_t>::max();
ReadSettings read_settings = local_context->getReadSettings();
Pipes pipes;
for (size_t stream = 0; stream < num_streams; ++stream)
{
if (use_marks_file)
{
size_t mark_begin = stream * num_marks / num_streams;
size_t mark_end = (stream + 1) * num_marks / num_streams;
size_t start_row = mark_begin ? marks_with_real_row_count[mark_begin - 1].rows : 0;
size_t end_row = mark_end ? marks_with_real_row_count[mark_end - 1].rows : 0;
row_limit = end_row - start_row;
for (const auto & data_file : data_files)
offsets[data_file.index] = data_file.marks[mark_begin].offset;
}
pipes.emplace_back(std::make_shared<LogSource>(
max_block_size,
all_columns,
*this,
row_limit,
offsets,
file_sizes,
limited_by_file_sizes,
read_settings));
}
/// No need to hold lock while reading because we read fixed range of data that does not change while appending more data.
return Pipe::unitePipes(std::move(pipes));
}
SinkToStoragePtr StorageLog::write(const ASTPtr & /*query*/, const StorageMetadataPtr & metadata_snapshot, ContextPtr local_context)
{
WriteLock lock{rwlock, getLockTimeout(local_context)};
if (!lock)
throw Exception("Lock timeout exceeded", ErrorCodes::TIMEOUT_EXCEEDED);
return std::make_shared<LogSink>(*this, metadata_snapshot, std::move(lock));
}
CheckResults StorageLog::checkData(const ASTPtr & /* query */, ContextPtr local_context)
{
ReadLock lock{rwlock, getLockTimeout(local_context)};
if (!lock)
throw Exception("Lock timeout exceeded", ErrorCodes::TIMEOUT_EXCEEDED);
return file_checker.check();
}
IStorage::ColumnSizeByName StorageLog::getColumnSizes() const
{
ReadLock lock{rwlock, std::chrono::seconds(DBMS_DEFAULT_LOCK_ACQUIRE_TIMEOUT_SEC)};
if (!lock)
throw Exception("Lock timeout exceeded", ErrorCodes::TIMEOUT_EXCEEDED);
ColumnSizeByName column_sizes;
for (const auto & column : getInMemoryMetadata().getColumns().getAllPhysical())
{
ISerialization::StreamCallback stream_callback = [&, this] (const ISerialization::SubstreamPath & substream_path)
{
String data_file_name = ISerialization::getFileNameForStream(column, substream_path);
auto it = data_files_by_names.find(data_file_name);
if (it != data_files_by_names.end())
{
const auto & data_file = *it->second;
column_sizes[column.name].data_compressed += file_checker.getFileSize(data_file.path);
}
};
auto serialization = column.type->getDefaultSerialization();
serialization->enumerateStreams(stream_callback);
}
return column_sizes;
}
void StorageLog::updateTotalRows(const WriteLock &)
{
if (!use_marks_file || !marks_loaded)
return;
if (num_data_files)
total_rows = data_files[INDEX_WITH_REAL_ROW_COUNT].marks.empty() ? 0 : data_files[INDEX_WITH_REAL_ROW_COUNT].marks.back().rows;
else
total_rows = 0;
}
std::optional<UInt64> StorageLog::totalRows(const Settings &) const
{
if (use_marks_file && marks_loaded)
return total_rows;
if (!total_bytes)
return 0;
return {};
}
std::optional<UInt64> StorageLog::totalBytes(const Settings &) const
{
return total_bytes;
}
void StorageLog::backupData(BackupEntriesCollector & backup_entries_collector, const String & data_path_in_backup, const std::optional<ASTs> & /* partitions */)
{
auto lock_timeout = getLockTimeout(backup_entries_collector.getContext());
loadMarks(lock_timeout);
ReadLock lock{rwlock, lock_timeout};
if (!lock)
throw Exception("Lock timeout exceeded", ErrorCodes::TIMEOUT_EXCEEDED);
if (!num_data_files || !file_checker.getFileSize(data_files[INDEX_WITH_REAL_ROW_COUNT].path))
return;
fs::path data_path_in_backup_fs = data_path_in_backup;
auto temp_dir_owner = std::make_shared<TemporaryFileOnDisk>(disk, "tmp/");
fs::path temp_dir = temp_dir_owner->getPath();
disk->createDirectories(temp_dir);
/// *.bin
for (const auto & data_file : data_files)
{
/// We make a copy of the data file because it can be changed later in write() or in truncate().
String data_file_name = fileName(data_file.path);
String hardlink_file_path = temp_dir / data_file_name;
disk->createHardLink(data_file.path, hardlink_file_path);
backup_entries_collector.addBackupEntry(
data_path_in_backup_fs / data_file_name,
std::make_unique<BackupEntryFromAppendOnlyFile>(
disk, hardlink_file_path, file_checker.getFileSize(data_file.path), std::nullopt, temp_dir_owner));
}
/// __marks.mrk
if (use_marks_file)
{
/// We make a copy of the data file because it can be changed later in write() or in truncate().
String marks_file_name = fileName(marks_file_path);
String hardlink_file_path = temp_dir / marks_file_name;
disk->createHardLink(marks_file_path, hardlink_file_path);
backup_entries_collector.addBackupEntry(
data_path_in_backup_fs / marks_file_name,
std::make_unique<BackupEntryFromAppendOnlyFile>(
disk, hardlink_file_path, file_checker.getFileSize(marks_file_path), std::nullopt, temp_dir_owner));
}
/// sizes.json
String files_info_path = file_checker.getPath();
backup_entries_collector.addBackupEntry(
data_path_in_backup_fs / fileName(files_info_path), std::make_unique<BackupEntryFromSmallFile>(disk, files_info_path));
/// columns.txt
backup_entries_collector.addBackupEntry(
data_path_in_backup_fs / "columns.txt",
std::make_unique<BackupEntryFromMemory>(getInMemoryMetadata().getColumns().getAllPhysical().toString()));
/// count.txt
if (use_marks_file)
{
size_t num_rows = data_files[INDEX_WITH_REAL_ROW_COUNT].marks.empty() ? 0 : data_files[INDEX_WITH_REAL_ROW_COUNT].marks.back().rows;
backup_entries_collector.addBackupEntry(
data_path_in_backup_fs / "count.txt", std::make_unique<BackupEntryFromMemory>(toString(num_rows)));
}
}
void StorageLog::restoreDataFromBackup(RestorerFromBackup & restorer, const String & data_path_in_backup, const std::optional<ASTs> & /* partitions */)
{
auto backup = restorer.getBackup();
if (!backup->hasFiles(data_path_in_backup))
return;
if (!num_data_files)
return;
if (!restorer.isNonEmptyTableAllowed() && total_bytes)
RestorerFromBackup::throwTableIsNotEmpty(getStorageID());
auto lock_timeout = getLockTimeout(restorer.getContext());
restorer.addDataRestoreTask(
[storage = std::static_pointer_cast<StorageLog>(shared_from_this()), backup, data_path_in_backup, lock_timeout]
{ storage->restoreDataImpl(backup, data_path_in_backup, lock_timeout); });
}
void StorageLog::restoreDataImpl(const BackupPtr & backup, const String & data_path_in_backup, std::chrono::seconds lock_timeout)
{
WriteLock lock{rwlock, lock_timeout};
if (!lock)
throw Exception("Lock timeout exceeded", ErrorCodes::TIMEOUT_EXCEEDED);
/// Load the marks if not loaded yet. We have to do that now because we're going to update these marks.
loadMarks(lock);
/// If there were no files, save zero file sizes to be able to rollback in case of error.
saveFileSizes(lock);
try
{
fs::path data_path_in_backup_fs = data_path_in_backup;
/// Append data files.
for (const auto & data_file : data_files)
{
String file_path_in_backup = data_path_in_backup_fs / fileName(data_file.path);
if (!backup->fileExists(file_path_in_backup))
throw Exception(ErrorCodes::CANNOT_RESTORE_TABLE, "File {} in backup is required to restore table", file_path_in_backup);
auto backup_entry = backup->readFile(file_path_in_backup);
auto in = backup_entry->getReadBuffer();
auto out = disk->writeFile(data_file.path, max_compress_block_size, WriteMode::Append);
copyData(*in, *out);
}
if (use_marks_file)
{
/// Append marks.
size_t num_extra_marks = 0;
String file_path_in_backup = data_path_in_backup_fs / fileName(marks_file_path);
if (!backup->fileExists(file_path_in_backup))
throw Exception(ErrorCodes::CANNOT_RESTORE_TABLE, "File {} in backup is required to restore table", file_path_in_backup);
size_t file_size = backup->getFileSize(file_path_in_backup);
if (file_size % (num_data_files * sizeof(Mark)) != 0)
throw Exception("Size of marks file is inconsistent", ErrorCodes::SIZES_OF_MARKS_FILES_ARE_INCONSISTENT);
num_extra_marks = file_size / (num_data_files * sizeof(Mark));
size_t num_marks = data_files[0].marks.size();
for (auto & data_file : data_files)
data_file.marks.reserve(num_marks + num_extra_marks);
std::vector<size_t> old_data_sizes;
std::vector<size_t> old_num_rows;
old_data_sizes.resize(num_data_files);
old_num_rows.resize(num_data_files);
for (size_t i = 0; i != num_data_files; ++i)
{
old_data_sizes[i] = file_checker.getFileSize(data_files[i].path);
old_num_rows[i] = num_marks ? data_files[i].marks[num_marks - 1].rows : 0;
}
auto backup_entry = backup->readFile(file_path_in_backup);
auto marks_rb = backup_entry->getReadBuffer();
for (size_t i = 0; i != num_extra_marks; ++i)
{
for (size_t j = 0; j != num_data_files; ++j)
{
Mark mark;
mark.read(*marks_rb);
mark.rows += old_num_rows[j]; /// Adjust the number of rows.
mark.offset += old_data_sizes[j]; /// Adjust the offset.
data_files[j].marks.push_back(mark);
}
}
}
/// Finish writing.
saveMarks(lock);
saveFileSizes(lock);
updateTotalRows(lock);
}
catch (...)
{
/// Rollback partial writes.
file_checker.repair();
removeUnsavedMarks(lock);
throw;
}
}
void registerStorageLog(StorageFactory & factory)
{
StorageFactory::StorageFeatures features{
.supports_settings = true
};
auto create_fn = [](const StorageFactory::Arguments & args)
{
if (!args.engine_args.empty())
throw Exception(
"Engine " + args.engine_name + " doesn't support any arguments (" + toString(args.engine_args.size()) + " given)",
ErrorCodes::NUMBER_OF_ARGUMENTS_DOESNT_MATCH);
String disk_name = getDiskName(*args.storage_def);
DiskPtr disk = args.getContext()->getDisk(disk_name);
return std::make_shared<StorageLog>(
args.engine_name,
disk,
args.relative_data_path,
args.table_id,
args.columns,
args.constraints,
args.comment,
args.attach,
args.getContext());
};
factory.registerStorage("Log", create_fn, features);
factory.registerStorage("TinyLog", create_fn, features);
}
}