ClickHouse/dbms/tests/integration/helpers/cluster.py
2018-12-27 22:42:25 +03:00

670 lines
27 KiB
Python

import os
import os.path as p
import pwd
import re
import subprocess
import shutil
import distutils.dir_util
import socket
import time
import errno
from dicttoxml import dicttoxml
import pymysql
import xml.dom.minidom
from kazoo.client import KazooClient
from kazoo.exceptions import KazooException
import psycopg2
import requests
import docker
from docker.errors import ContainerError
from .client import Client, CommandRequest
from .hdfs_api import HDFSApi
HELPERS_DIR = p.dirname(__file__)
DEFAULT_ENV_NAME = 'env_file'
def _create_env_file(path, variables, fname=DEFAULT_ENV_NAME):
full_path = os.path.join(path, fname)
with open(full_path, 'w') as f:
for var, value in variables.items():
f.write("=".join([var, value]) + "\n")
return full_path
def subprocess_check_call(args):
# Uncomment for debugging
# print('run:', ' ' . join(args))
subprocess.check_call(args)
def subprocess_call(args):
# Uncomment for debugging
# print('run:', ' ' . join(args))
subprocess.call(args)
class ClickHouseCluster:
"""ClickHouse cluster with several instances and (possibly) ZooKeeper.
Add instances with several calls to add_instance(), then start them with the start() call.
Directories for instances are created in the directory of base_path. After cluster is started,
these directories will contain logs, database files, docker-compose config, ClickHouse configs etc.
"""
def __init__(self, base_path, name=None, base_configs_dir=None, server_bin_path=None, client_bin_path=None,
zookeeper_config_path=None, custom_dockerd_host=None):
self.base_dir = p.dirname(base_path)
self.name = name if name is not None else ''
self.base_configs_dir = base_configs_dir or os.environ.get('CLICKHOUSE_TESTS_BASE_CONFIG_DIR', '/etc/clickhouse-server/')
self.server_bin_path = p.realpath(server_bin_path or os.environ.get('CLICKHOUSE_TESTS_SERVER_BIN_PATH', '/usr/bin/clickhouse'))
self.client_bin_path = p.realpath(client_bin_path or os.environ.get('CLICKHOUSE_TESTS_CLIENT_BIN_PATH', '/usr/bin/clickhouse-client'))
self.zookeeper_config_path = p.join(self.base_dir, zookeeper_config_path) if zookeeper_config_path else p.join(HELPERS_DIR, 'zookeeper_config.xml')
self.project_name = pwd.getpwuid(os.getuid()).pw_name + p.basename(self.base_dir) + self.name
# docker-compose removes everything non-alphanumeric from project names so we do it too.
self.project_name = re.sub(r'[^a-z0-9]', '', self.project_name.lower())
self.instances_dir = p.join(self.base_dir, '_instances' + ('' if not self.name else '_' + self.name))
custom_dockerd_host = custom_dockerd_host or os.environ.get('CLICKHOUSE_TESTS_DOCKERD_HOST')
self.docker_api_version = os.environ.get("DOCKER_API_VERSION")
self.base_cmd = ['docker-compose']
if custom_dockerd_host:
self.base_cmd += ['--host', custom_dockerd_host]
self.base_cmd += ['--project-directory', self.base_dir, '--project-name', self.project_name]
self.base_zookeeper_cmd = None
self.base_mysql_cmd = []
self.base_kafka_cmd = []
self.pre_zookeeper_commands = []
self.instances = {}
self.with_zookeeper = False
self.with_mysql = False
self.with_postgres = False
self.with_kafka = False
self.with_odbc_drivers = False
self.with_hdfs = False
self.docker_client = None
self.is_up = False
def get_client_cmd(self):
cmd = self.client_bin_path
if p.basename(cmd) == 'clickhouse':
cmd += " client"
return cmd
def add_instance(self, name, config_dir=None, main_configs=[], user_configs=[], macros={}, with_zookeeper=False, with_mysql=False, with_kafka=False, clickhouse_path_dir=None, with_odbc_drivers=False, with_postgres=False, with_hdfs=False, hostname=None, env_variables={}, image="yandex/clickhouse-integration-test", stay_alive=False, ipv4_address=None, ipv6_address=None):
"""Add an instance to the cluster.
name - the name of the instance directory and the value of the 'instance' macro in ClickHouse.
config_dir - a directory with config files which content will be copied to /etc/clickhouse-server/ directory
main_configs - a list of config files that will be added to config.d/ directory
user_configs - a list of config files that will be added to users.d/ directory
with_zookeeper - if True, add ZooKeeper configuration to configs and ZooKeeper instances to the cluster.
"""
if self.is_up:
raise Exception("Can\'t add instance %s: cluster is already up!" % name)
if name in self.instances:
raise Exception("Can\'t add instance `%s': there is already an instance with the same name!" % name)
instance = ClickHouseInstance(
self, self.base_dir, name, config_dir, main_configs, user_configs, macros, with_zookeeper,
self.zookeeper_config_path, with_mysql, with_kafka, self.base_configs_dir, self.server_bin_path,
clickhouse_path_dir, with_odbc_drivers, hostname=hostname, env_variables=env_variables, image=image,
stay_alive=stay_alive, ipv4_address=ipv4_address, ipv6_address=ipv6_address)
self.instances[name] = instance
self.base_cmd.extend(['--file', instance.docker_compose_path])
if with_zookeeper and not self.with_zookeeper:
self.with_zookeeper = True
self.base_cmd.extend(['--file', p.join(HELPERS_DIR, 'docker_compose_zookeeper.yml')])
self.base_zookeeper_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(HELPERS_DIR, 'docker_compose_zookeeper.yml')]
if with_mysql and not self.with_mysql:
self.with_mysql = True
self.base_cmd.extend(['--file', p.join(HELPERS_DIR, 'docker_compose_mysql.yml')])
self.base_mysql_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(HELPERS_DIR, 'docker_compose_mysql.yml')]
if with_postgres and not self.with_postgres:
self.with_postgres = True
self.base_cmd.extend(['--file', p.join(HELPERS_DIR, 'docker_compose_postgres.yml')])
self.base_postgres_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(HELPERS_DIR, 'docker_compose_postgres.yml')]
if with_odbc_drivers and not self.with_odbc_drivers:
self.with_odbc_drivers = True
if not self.with_mysql:
self.with_mysql = True
self.base_cmd.extend(['--file', p.join(HELPERS_DIR, 'docker_compose_mysql.yml')])
self.base_mysql_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(HELPERS_DIR, 'docker_compose_mysql.yml')]
if not self.with_postgres:
self.with_postgres = True
self.base_cmd.extend(['--file', p.join(HELPERS_DIR, 'docker_compose_postgres.yml')])
self.base_postgres_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(HELPERS_DIR, 'docker_compose_postgres.yml')]
if with_kafka and not self.with_kafka:
self.with_kafka = True
self.base_cmd.extend(['--file', p.join(HELPERS_DIR, 'docker_compose_kafka.yml')])
self.base_kafka_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(HELPERS_DIR, 'docker_compose_kafka.yml')]
if with_hdfs and not self.with_hdfs:
self.with_hdfs = True
self.base_cmd.extend(['--file', p.join(HELPERS_DIR, 'docker_compose_hdfs.yml')])
self.base_hdfs_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(HELPERS_DIR, 'docker_compose_hdfs.yml')]
return instance
def get_instance_docker_id(self, instance_name):
# According to how docker-compose names containers.
return self.project_name + '_' + instance_name + '_1'
def get_instance_ip(self, instance_name):
docker_id = self.get_instance_docker_id(instance_name)
handle = self.docker_client.containers.get(docker_id)
return handle.attrs['NetworkSettings']['Networks'].values()[0]['IPAddress']
def wait_mysql_to_start(self, timeout=60):
start = time.time()
while time.time() - start < timeout:
try:
conn = pymysql.connect(user='root', password='clickhouse', host='127.0.0.1', port=3308)
conn.close()
print "Mysql Started"
return
except Exception as ex:
print "Can't connect to MySQL " + str(ex)
time.sleep(0.5)
raise Exception("Cannot wait MySQL container")
def wait_postgres_to_start(self, timeout=60):
start = time.time()
while time.time() - start < timeout:
try:
conn_string = "host='localhost' user='postgres' password='mysecretpassword'"
conn = psycopg2.connect(conn_string)
conn.close()
print "Postgres Started"
return
except Exception as ex:
print "Can't connect to Postgres " + str(ex)
time.sleep(0.5)
raise Exception("Cannot wait Postgres container")
def wait_zookeeper_to_start(self, timeout=60):
start = time.time()
while time.time() - start < timeout:
try:
for instance in ['zoo1', 'zoo2', 'zoo3']:
conn = self.get_kazoo_client(instance)
conn.get_children('/')
print "All instances of ZooKeeper started"
return
except Exception as ex:
print "Can't connect to ZooKeeper " + str(ex)
time.sleep(0.5)
raise Exception("Cannot wait ZooKeeper container")
def wait_hdfs_to_start(self, timeout=60):
hdfs_api = HDFSApi("root")
start = time.time()
while time.time() - start < timeout:
try:
hdfs_api.write_data("/somefilewithrandomname222", "1")
print "Connected to HDFS and SafeMode disabled! "
return
except Exception as ex:
print "Can't connect to HDFS " + str(ex)
time.sleep(1)
raise Exception("Can't wait HDFS to start")
def start(self, destroy_dirs=True):
if self.is_up:
return
# Just in case kill unstopped containers from previous launch
try:
if not subprocess_call(['docker-compose', 'kill']):
subprocess_call(['docker-compose', 'down', '--volumes'])
except:
pass
if destroy_dirs and p.exists(self.instances_dir):
print "Removing instances dir", self.instances_dir
shutil.rmtree(self.instances_dir)
for instance in self.instances.values():
instance.create_dir(destroy_dir=destroy_dirs)
self.docker_client = docker.from_env(version=self.docker_api_version)
if self.with_zookeeper and self.base_zookeeper_cmd:
subprocess_check_call(self.base_zookeeper_cmd + ['up', '-d', '--force-recreate'])
for command in self.pre_zookeeper_commands:
self.run_kazoo_commands_with_retries(command, repeats=5)
self.wait_zookeeper_to_start(120)
if self.with_mysql and self.base_mysql_cmd:
subprocess_check_call(self.base_mysql_cmd + ['up', '-d', '--force-recreate'])
self.wait_mysql_to_start(120)
if self.with_postgres and self.base_postgres_cmd:
subprocess_check_call(self.base_postgres_cmd + ['up', '-d', '--force-recreate'])
self.wait_postgres_to_start(120)
if self.with_kafka and self.base_kafka_cmd:
subprocess_check_call(self.base_kafka_cmd + ['up', '-d', '--force-recreate'])
self.kafka_docker_id = self.get_instance_docker_id('kafka1')
if self.with_hdfs and self.base_hdfs_cmd:
subprocess_check_call(self.base_hdfs_cmd + ['up', '-d', '--force-recreate'])
self.wait_hdfs_to_start(120)
subprocess_check_call(self.base_cmd + ['up', '-d', '--no-recreate'])
start_deadline = time.time() + 20.0 # seconds
for instance in self.instances.itervalues():
instance.docker_client = self.docker_client
instance.ip_address = self.get_instance_ip(instance.name)
instance.wait_for_start(start_deadline)
instance.client = Client(instance.ip_address, command=self.client_bin_path)
self.is_up = True
def shutdown(self, kill=True):
if kill:
subprocess_check_call(self.base_cmd + ['kill'])
subprocess_check_call(self.base_cmd + ['down', '--volumes', '--remove-orphans'])
self.is_up = False
self.docker_client = None
for instance in self.instances.values():
instance.docker_client = None
instance.ip_address = None
instance.client = None
def get_kazoo_client(self, zoo_instance_name):
zk = KazooClient(hosts=self.get_instance_ip(zoo_instance_name))
zk.start()
return zk
def run_kazoo_commands_with_retries(self, kazoo_callback, zoo_instance_name = 'zoo1', repeats=1, sleep_for=1):
for i in range(repeats - 1):
try:
kazoo_callback(self.get_kazoo_client(zoo_instance_name))
return
except KazooException as e:
print repr(e)
time.sleep(sleep_for)
kazoo_callback(self.get_kazoo_client(zoo_instance_name))
def add_zookeeper_startup_command(self, command):
self.pre_zookeeper_commands.append(command)
CLICKHOUSE_START_COMMAND = "clickhouse server --config-file=/etc/clickhouse-server/config.xml --log-file=/var/log/clickhouse-server/clickhouse-server.log --errorlog-file=/var/log/clickhouse-server/clickhouse-server.err.log"
CLICKHOUSE_STAY_ALIVE_COMMAND = 'bash -c "{} --daemon; tail -f /dev/null"'.format(CLICKHOUSE_START_COMMAND)
DOCKER_COMPOSE_TEMPLATE = '''
version: '2.2'
services:
{name}:
image: {image}
hostname: {hostname}
volumes:
- {binary_path}:/usr/bin/clickhouse:ro
- {configs_dir}:/etc/clickhouse-server/
- {db_dir}:/var/lib/clickhouse/
- {logs_dir}:/var/log/clickhouse-server/
{odbc_ini_path}
entrypoint: {entrypoint_cmd}
cap_add:
- SYS_PTRACE
depends_on: {depends_on}
env_file:
- {env_file}
{networks}
{app_net}
{ipv4_address}
{ipv6_address}
networks:
app_net:
driver: bridge
enable_ipv6: true
ipam:
driver: default
config:
- subnet: 10.5.0.0/12
gateway: 10.5.1.1
- subnet: 2001:3984:3989::/64
gateway: 2001:3984:3989::1
'''
class ClickHouseInstance:
def __init__(
self, cluster, base_path, name, custom_config_dir, custom_main_configs, custom_user_configs, macros,
with_zookeeper, zookeeper_config_path, with_mysql, with_kafka, base_configs_dir, server_bin_path,
clickhouse_path_dir, with_odbc_drivers, hostname=None, env_variables={}, image="yandex/clickhouse-integration-test",
stay_alive=False, ipv4_address=None, ipv6_address=None):
self.name = name
self.base_cmd = cluster.base_cmd[:]
self.docker_id = cluster.get_instance_docker_id(self.name)
self.cluster = cluster
self.hostname = hostname if hostname is not None else self.name
self.custom_config_dir = p.abspath(p.join(base_path, custom_config_dir)) if custom_config_dir else None
self.custom_main_config_paths = [p.abspath(p.join(base_path, c)) for c in custom_main_configs]
self.custom_user_config_paths = [p.abspath(p.join(base_path, c)) for c in custom_user_configs]
self.clickhouse_path_dir = p.abspath(p.join(base_path, clickhouse_path_dir)) if clickhouse_path_dir else None
self.macros = macros if macros is not None else {}
self.with_zookeeper = with_zookeeper
self.zookeeper_config_path = zookeeper_config_path
self.base_configs_dir = base_configs_dir
self.server_bin_path = server_bin_path
self.with_mysql = with_mysql
self.with_kafka = with_kafka
self.path = p.join(self.cluster.instances_dir, name)
self.docker_compose_path = p.join(self.path, 'docker_compose.yml')
self.env_variables = env_variables
if with_odbc_drivers:
self.odbc_ini_path = os.path.dirname(self.docker_compose_path) + "/odbc.ini:/etc/odbc.ini"
self.with_mysql = True
else:
self.odbc_ini_path = ""
self.docker_client = None
self.ip_address = None
self.client = None
self.default_timeout = 20.0 # 20 sec
self.image = image
self.stay_alive = stay_alive
self.ipv4_address = ipv4_address
self.ipv6_address = ipv6_address
# Connects to the instance via clickhouse-client, sends a query (1st argument) and returns the answer
def query(self, sql, stdin=None, timeout=None, settings=None, user=None, ignore_error=False):
return self.client.query(sql, stdin, timeout, settings, user, ignore_error)
def query_with_retry(self, sql, stdin=None, timeout=None, settings=None, user=None, ignore_error=False, retry_count=20, sleep_time=0.5, check_callback=lambda x: True):
result = None
for i in range(retry_count):
try:
result = self.query(sql, stdin, timeout, settings, user, ignore_error)
if check_callback(result):
return result
time.sleep(sleep_time)
except Exception as ex:
print "Retry {} got exception {}".format(i + 1, ex)
time.sleep(sleep_time)
if result is not None:
return result
raise Exception("Can't execute query {}".format(sql))
# As query() but doesn't wait response and returns response handler
def get_query_request(self, *args, **kwargs):
return self.client.get_query_request(*args, **kwargs)
def exec_in_container(self, cmd, **kwargs):
container = self.get_docker_handle()
exec_id = self.docker_client.api.exec_create(container.id, cmd, **kwargs)
output = self.docker_client.api.exec_start(exec_id, detach=False)
output = output.decode('utf8')
exit_code = self.docker_client.api.exec_inspect(exec_id)['ExitCode']
if exit_code:
raise Exception('Cmd "{}" failed! Return code {}. Output: {}'.format(' '.join(cmd), exit_code, output))
return output
def get_docker_handle(self):
return self.docker_client.containers.get(self.docker_id)
def stop(self):
self.get_docker_handle().stop(self.default_timeout)
def start(self):
self.get_docker_handle().start()
def wait_for_start(self, deadline=None, timeout=None):
start_time = time.time()
if timeout is not None:
deadline = start_time + timeout
while True:
handle = self.get_docker_handle()
status = handle.status;
if status == 'exited':
raise Exception("Instance `{}' failed to start. Container status: {}, logs: {}".format(self.name, status, handle.logs()))
current_time = time.time()
time_left = deadline - current_time
if deadline is not None and current_time >= deadline:
raise Exception("Timed out while waiting for instance `{}' with ip address {} to start. "
"Container status: {}".format(self.name, self.ip_address, status))
# Repeatedly poll the instance address until there is something that listens there.
# Usually it means that ClickHouse is ready to accept queries.
try:
sock = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
sock.settimeout(time_left)
sock.connect((self.ip_address, 9000))
return
except socket.timeout:
continue
except socket.error as e:
if e.errno == errno.ECONNREFUSED:
time.sleep(0.1)
else:
raise
finally:
sock.close()
@staticmethod
def dict_to_xml(dictionary):
xml_str = dicttoxml(dictionary, custom_root="yandex", attr_type=False)
return xml.dom.minidom.parseString(xml_str).toprettyxml()
@property
def odbc_drivers(self):
if self.odbc_ini_path:
return {
"SQLite3": {
"DSN": "sqlite3_odbc",
"Database" : "/tmp/sqliteodbc",
"Driver": "/usr/lib/x86_64-linux-gnu/odbc/libsqlite3odbc.so",
"Setup": "/usr/lib/x86_64-linux-gnu/odbc/libsqlite3odbc.so",
},
"MySQL": {
"DSN": "mysql_odbc",
"Driver": "/usr/lib/x86_64-linux-gnu/odbc/libmyodbc.so",
"Database": "clickhouse",
"Uid": "root",
"Pwd": "clickhouse",
"Server": "mysql1",
},
"PostgreSQL": {
"DSN": "postgresql_odbc",
"Database": "postgres",
"UserName": "postgres",
"Password": "mysecretpassword",
"Port": "5432",
"Servername": "postgres1",
"Protocol": "9.3",
"ReadOnly": "No",
"RowVersioning": "No",
"ShowSystemTables": "No",
"Driver": "/usr/lib/x86_64-linux-gnu/odbc/psqlodbca.so",
"Setup": "/usr/lib/x86_64-linux-gnu/odbc/libodbcpsqlS.so",
"ConnSettings": "",
}
}
else:
return {}
def _create_odbc_config_file(self):
with open(self.odbc_ini_path.split(':')[0], 'w') as f:
for driver_setup in self.odbc_drivers.values():
f.write("[{}]\n".format(driver_setup["DSN"]))
for key, value in driver_setup.items():
if key != "DSN":
f.write(key + "=" + value + "\n")
def create_dir(self, destroy_dir=True):
"""Create the instance directory and all the needed files there."""
if destroy_dir:
self.destroy_dir()
elif p.exists(self.path):
return
os.makedirs(self.path)
configs_dir = p.abspath(p.join(self.path, 'configs'))
os.mkdir(configs_dir)
shutil.copy(p.join(self.base_configs_dir, 'config.xml'), configs_dir)
shutil.copy(p.join(self.base_configs_dir, 'users.xml'), configs_dir)
# used by all utils with any config
conf_d_dir = p.abspath(p.join(configs_dir, 'conf.d'))
# used by server with main config.xml
config_d_dir = p.abspath(p.join(configs_dir, 'config.d'))
users_d_dir = p.abspath(p.join(configs_dir, 'users.d'))
os.mkdir(conf_d_dir)
os.mkdir(config_d_dir)
os.mkdir(users_d_dir)
shutil.copy(p.join(HELPERS_DIR, 'common_instance_config.xml'), config_d_dir)
# Generate and write macros file
macros = self.macros.copy()
macros['instance'] = self.name
with open(p.join(config_d_dir, 'macros.xml'), 'w') as macros_config:
macros_config.write(self.dict_to_xml({"macros" : macros}))
# Put ZooKeeper config
if self.with_zookeeper:
shutil.copy(self.zookeeper_config_path, conf_d_dir)
# Copy config dir
if self.custom_config_dir:
distutils.dir_util.copy_tree(self.custom_config_dir, configs_dir)
# Copy config.d configs
for path in self.custom_main_config_paths:
shutil.copy(path, config_d_dir)
# Copy users.d configs
for path in self.custom_user_config_paths:
shutil.copy(path, users_d_dir)
db_dir = p.abspath(p.join(self.path, 'database'))
os.mkdir(db_dir)
if self.clickhouse_path_dir is not None:
distutils.dir_util.copy_tree(self.clickhouse_path_dir, db_dir)
logs_dir = p.abspath(p.join(self.path, 'logs'))
os.mkdir(logs_dir)
depends_on = []
if self.with_mysql:
depends_on.append("mysql1")
if self.with_kafka:
depends_on.append("kafka1")
if self.with_zookeeper:
depends_on.append("zoo1")
depends_on.append("zoo2")
depends_on.append("zoo3")
env_file = _create_env_file(os.path.dirname(self.docker_compose_path), self.env_variables)
odbc_ini_path = ""
if self.odbc_ini_path:
self._create_odbc_config_file()
odbc_ini_path = '- ' + self.odbc_ini_path
entrypoint_cmd = CLICKHOUSE_START_COMMAND
if self.stay_alive:
entrypoint_cmd = CLICKHOUSE_STAY_ALIVE_COMMAND
ipv4_address = ipv6_address = ""
if self.ipv4_address is None and self.ipv6_address is None:
networks = ""
app_net = ""
else:
networks = "networks:"
app_net = "app_net:"
if self.ipv4_address is not None:
ipv4_address = "ipv4_address: " + self.ipv4_address
if self.ipv6_address is not None:
ipv6_address = "ipv6_address: " + self.ipv6_address
with open(self.docker_compose_path, 'w') as docker_compose:
docker_compose.write(DOCKER_COMPOSE_TEMPLATE.format(
image=self.image,
name=self.name,
hostname=self.hostname,
binary_path=self.server_bin_path,
configs_dir=configs_dir,
config_d_dir=config_d_dir,
db_dir=db_dir,
logs_dir=logs_dir,
depends_on=str(depends_on),
env_file=env_file,
odbc_ini_path=odbc_ini_path,
entrypoint_cmd=entrypoint_cmd,
networks=networks,
app_net=app_net,
ipv4_address=ipv4_address,
ipv6_address=ipv6_address,
))
def destroy_dir(self):
if p.exists(self.path):
shutil.rmtree(self.path)