ClickHouse/tests/integration/helpers/cluster.py

1140 lines
50 KiB
Python

import base64
import distutils.dir_util
import errno
import os
import os.path as p
import pwd
import re
import shutil
import socket
import subprocess
import time
import urllib
import httplib
import requests
import xml.dom.minidom
import logging
import docker
import pprint
import psycopg2
import pymongo
import pymysql
import cassandra.cluster
from dicttoxml import dicttoxml
from kazoo.client import KazooClient
from kazoo.exceptions import KazooException
from minio import Minio
from confluent.schemaregistry.client import CachedSchemaRegistryClient
from .client import Client
from .hdfs_api import HDFSApi
HELPERS_DIR = p.dirname(__file__)
CLICKHOUSE_ROOT_DIR = p.join(p.dirname(__file__), "../../..")
DOCKER_COMPOSE_DIR = p.join(CLICKHOUSE_ROOT_DIR, "docker/test/integration/compose/")
DEFAULT_ENV_NAME = 'env_file'
SANITIZER_SIGN = "=================="
def _create_env_file(path, variables, fname=DEFAULT_ENV_NAME):
full_path = os.path.join(path, fname)
with open(full_path, 'w') as f:
for var, value in variables.items():
f.write("=".join([var, value]) + "\n")
return full_path
def subprocess_check_call(args):
# Uncomment for debugging
# print('run:', ' ' . join(args))
subprocess.check_call(args)
def subprocess_call(args):
# Uncomment for debugging
# print('run:', ' ' . join(args))
subprocess.call(args)
def get_odbc_bridge_path():
path = os.environ.get('CLICKHOUSE_TESTS_ODBC_BRIDGE_BIN_PATH')
if path is None:
server_path = os.environ.get('CLICKHOUSE_TESTS_SERVER_BIN_PATH')
if server_path is not None:
return os.path.join(os.path.dirname(server_path), 'clickhouse-odbc-bridge')
else:
return '/usr/bin/clickhouse-odbc-bridge'
return path
class ClickHouseCluster:
"""ClickHouse cluster with several instances and (possibly) ZooKeeper.
Add instances with several calls to add_instance(), then start them with the start() call.
Directories for instances are created in the directory of base_path. After cluster is started,
these directories will contain logs, database files, docker-compose config, ClickHouse configs etc.
"""
def __init__(self, base_path, name=None, base_configs_dir=None, server_bin_path=None, client_bin_path=None,
odbc_bridge_bin_path=None, zookeeper_config_path=None, custom_dockerd_host=None):
self.base_dir = p.dirname(base_path)
self.name = name if name is not None else ''
self.base_configs_dir = base_configs_dir or os.environ.get('CLICKHOUSE_TESTS_BASE_CONFIG_DIR',
'/etc/clickhouse-server/')
self.server_bin_path = p.realpath(
server_bin_path or os.environ.get('CLICKHOUSE_TESTS_SERVER_BIN_PATH', '/usr/bin/clickhouse'))
self.odbc_bridge_bin_path = p.realpath(odbc_bridge_bin_path or get_odbc_bridge_path())
self.client_bin_path = p.realpath(
client_bin_path or os.environ.get('CLICKHOUSE_TESTS_CLIENT_BIN_PATH', '/usr/bin/clickhouse-client'))
self.zookeeper_config_path = p.join(self.base_dir, zookeeper_config_path) if zookeeper_config_path else p.join(
HELPERS_DIR, 'zookeeper_config.xml')
self.project_name = pwd.getpwuid(os.getuid()).pw_name + p.basename(self.base_dir) + self.name
# docker-compose removes everything non-alphanumeric from project names so we do it too.
self.project_name = re.sub(r'[^a-z0-9]', '', self.project_name.lower())
self.instances_dir = p.join(self.base_dir, '_instances' + ('' if not self.name else '_' + self.name))
self.docker_logs_path = p.join(self.instances_dir, 'docker.log')
custom_dockerd_host = custom_dockerd_host or os.environ.get('CLICKHOUSE_TESTS_DOCKERD_HOST')
self.docker_api_version = os.environ.get("DOCKER_API_VERSION")
self.base_cmd = ['docker-compose']
if custom_dockerd_host:
self.base_cmd += ['--host', custom_dockerd_host]
self.base_cmd += ['--project-directory', self.base_dir, '--project-name', self.project_name]
self.base_zookeeper_cmd = None
self.base_mysql_cmd = []
self.base_kafka_cmd = []
self.base_cassandra_cmd = []
self.pre_zookeeper_commands = []
self.instances = {}
self.with_zookeeper = False
self.with_mysql = False
self.with_postgres = False
self.with_kafka = False
self.with_odbc_drivers = False
self.with_hdfs = False
self.with_mongo = False
self.with_net_trics = False
self.with_redis = False
self.with_cassandra = False
self.with_minio = False
self.minio_host = "minio1"
self.minio_bucket = "root"
self.minio_port = 9001
self.minio_client = None # type: Minio
self.minio_redirect_host = "redirect"
self.minio_redirect_port = 80
# available when with_kafka == True
self.schema_registry_client = None
self.schema_registry_host = "schema-registry"
self.schema_registry_port = 8081
self.zookeeper_use_tmpfs = True
self.docker_client = None
self.is_up = False
def get_client_cmd(self):
cmd = self.client_bin_path
if p.basename(cmd) == 'clickhouse':
cmd += " client"
return cmd
def add_instance(self, name, config_dir=None, main_configs=None, user_configs=None, macros=None,
with_zookeeper=False, with_mysql=False, with_kafka=False, clickhouse_path_dir=None,
with_odbc_drivers=False, with_postgres=False, with_hdfs=False, with_mongo=False,
with_redis=False, with_minio=False, with_cassandra=False,
hostname=None, env_variables=None, image="yandex/clickhouse-integration-test",
stay_alive=False, ipv4_address=None, ipv6_address=None, with_installed_binary=False, tmpfs=None,
zookeeper_docker_compose_path=None, zookeeper_use_tmpfs=True):
"""Add an instance to the cluster.
name - the name of the instance directory and the value of the 'instance' macro in ClickHouse.
config_dir - a directory with config files which content will be copied to /etc/clickhouse-server/ directory
main_configs - a list of config files that will be added to config.d/ directory
user_configs - a list of config files that will be added to users.d/ directory
with_zookeeper - if True, add ZooKeeper configuration to configs and ZooKeeper instances to the cluster.
"""
if self.is_up:
raise Exception("Can\'t add instance %s: cluster is already up!" % name)
if name in self.instances:
raise Exception("Can\'t add instance `%s': there is already an instance with the same name!" % name)
instance = ClickHouseInstance(
self, self.base_dir, name, config_dir, main_configs or [], user_configs or [], macros or {},
with_zookeeper,
self.zookeeper_config_path, with_mysql, with_kafka, with_mongo, with_redis, with_minio, with_cassandra,
self.base_configs_dir, self.server_bin_path,
self.odbc_bridge_bin_path, clickhouse_path_dir, with_odbc_drivers, hostname=hostname,
env_variables=env_variables or {}, image=image, stay_alive=stay_alive, ipv4_address=ipv4_address,
ipv6_address=ipv6_address,
with_installed_binary=with_installed_binary, tmpfs=tmpfs or [])
self.instances[name] = instance
if ipv4_address is not None or ipv6_address is not None:
self.with_net_trics = True
self.base_cmd.extend(['--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_net.yml')])
self.base_cmd.extend(['--file', instance.docker_compose_path])
cmds = []
if with_zookeeper and not self.with_zookeeper:
if not zookeeper_docker_compose_path:
zookeeper_docker_compose_path = p.join(DOCKER_COMPOSE_DIR, 'docker_compose_zookeeper.yml')
self.with_zookeeper = True
self.zookeeper_use_tmpfs = zookeeper_use_tmpfs
self.base_cmd.extend(['--file', zookeeper_docker_compose_path])
self.base_zookeeper_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', zookeeper_docker_compose_path]
cmds.append(self.base_zookeeper_cmd)
if with_mysql and not self.with_mysql:
self.with_mysql = True
self.base_cmd.extend(['--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_mysql.yml')])
self.base_mysql_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_mysql.yml')]
cmds.append(self.base_mysql_cmd)
if with_postgres and not self.with_postgres:
self.with_postgres = True
self.base_cmd.extend(['--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_postgres.yml')])
self.base_postgres_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_postgres.yml')]
cmds.append(self.base_postgres_cmd)
if with_odbc_drivers and not self.with_odbc_drivers:
self.with_odbc_drivers = True
if not self.with_mysql:
self.with_mysql = True
self.base_cmd.extend(['--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_mysql.yml')])
self.base_mysql_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_mysql.yml')]
cmds.append(self.base_mysql_cmd)
if not self.with_postgres:
self.with_postgres = True
self.base_cmd.extend(['--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_postgres.yml')])
self.base_postgres_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file',
p.join(DOCKER_COMPOSE_DIR, 'docker_compose_postgres.yml')]
cmds.append(self.base_postgres_cmd)
if with_kafka and not self.with_kafka:
self.with_kafka = True
self.base_cmd.extend(['--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_kafka.yml')])
self.base_kafka_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_kafka.yml')]
cmds.append(self.base_kafka_cmd)
if with_hdfs and not self.with_hdfs:
self.with_hdfs = True
self.base_cmd.extend(['--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_hdfs.yml')])
self.base_hdfs_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_hdfs.yml')]
cmds.append(self.base_hdfs_cmd)
if with_mongo and not self.with_mongo:
self.with_mongo = True
self.base_cmd.extend(['--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_mongo.yml')])
self.base_mongo_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_mongo.yml')]
cmds.append(self.base_mongo_cmd)
if self.with_net_trics:
for cmd in cmds:
cmd.extend(['--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_net.yml')])
if with_redis and not self.with_redis:
self.with_redis = True
self.base_cmd.extend(['--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_redis.yml')])
self.base_redis_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_redis.yml')]
if with_minio and not self.with_minio:
self.with_minio = True
self.base_cmd.extend(['--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_minio.yml')])
self.base_minio_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_minio.yml')]
cmds.append(self.base_minio_cmd)
if with_cassandra and not self.with_cassandra:
self.with_cassandra = True
self.base_cmd.extend(['--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_cassandra.yml')])
self.base_cassandra_cmd = ['docker-compose', '--project-directory', self.base_dir, '--project-name',
self.project_name, '--file', p.join(DOCKER_COMPOSE_DIR, 'docker_compose_cassandra.yml')]
return instance
def get_instance_docker_id(self, instance_name):
# According to how docker-compose names containers.
return self.project_name + '_' + instance_name + '_1'
def _replace(self, path, what, to):
with open(path, 'r') as p:
data = p.read()
data = data.replace(what, to)
with open(path, 'w') as p:
p.write(data)
def restart_instance_with_ip_change(self, node, new_ip):
if '::' in new_ip:
if node.ipv6_address is None:
raise Exception("You should specity ipv6_address in add_node method")
self._replace(node.docker_compose_path, node.ipv6_address, new_ip)
node.ipv6_address = new_ip
else:
if node.ipv4_address is None:
raise Exception("You should specity ipv4_address in add_node method")
self._replace(node.docker_compose_path, node.ipv4_address, new_ip)
node.ipv4_address = new_ip
subprocess.check_call(self.base_cmd + ["stop", node.name])
subprocess.check_call(self.base_cmd + ["rm", "--force", "--stop", node.name])
subprocess.check_call(self.base_cmd + ["up", "--force-recreate", "--no-deps", "-d", node.name])
node.ip_address = self.get_instance_ip(node.name)
node.client = Client(node.ip_address, command=self.client_bin_path)
start_deadline = time.time() + 20.0 # seconds
node.wait_for_start(start_deadline)
return node
def get_instance_ip(self, instance_name):
docker_id = self.get_instance_docker_id(instance_name)
handle = self.docker_client.containers.get(docker_id)
return handle.attrs['NetworkSettings']['Networks'].values()[0]['IPAddress']
def get_container_id(self, instance_name):
docker_id = self.get_instance_docker_id(instance_name)
handle = self.docker_client.containers.get(docker_id)
return handle.attrs['Id']
def get_container_logs(self, instance_name):
container_id = self.get_container_id(instance_name)
return self.docker_client.api.logs(container_id)
def exec_in_container(self, container_id, cmd, detach=False, **kwargs):
exec_id = self.docker_client.api.exec_create(container_id, cmd, **kwargs)
output = self.docker_client.api.exec_start(exec_id, detach=detach)
output = output.decode('utf8')
exit_code = self.docker_client.api.exec_inspect(exec_id)['ExitCode']
if exit_code:
container_info = self.docker_client.api.inspect_container(container_id)
image_id = container_info.get('Image')
image_info = self.docker_client.api.inspect_image(image_id)
print("Command failed in container {}: ".format(container_id))
pprint.pprint(container_info)
print("")
print("Container {} uses image {}: ".format(container_id, image_id))
pprint.pprint(image_info)
print("")
raise Exception('Cmd "{}" failed in container {}. Return code {}. Output: {}'.format(' '.join(cmd), container_id, exit_code, output))
return output
def copy_file_to_container(self, container_id, local_path, dest_path):
with open(local_path, 'r') as fdata:
data = fdata.read()
encoded_data = base64.b64encode(data)
self.exec_in_container(container_id, ["bash", "-c", "echo {} | base64 --decode > {}".format(encoded_data, dest_path)],
user='root')
def wait_mysql_to_start(self, timeout=60):
start = time.time()
while time.time() - start < timeout:
try:
conn = pymysql.connect(user='root', password='clickhouse', host='127.0.0.1', port=3308)
conn.close()
print "Mysql Started"
return
except Exception as ex:
print "Can't connect to MySQL " + str(ex)
time.sleep(0.5)
subprocess_call(['docker-compose', 'ps', '--services', '--all'])
raise Exception("Cannot wait MySQL container")
def wait_postgres_to_start(self, timeout=60):
start = time.time()
while time.time() - start < timeout:
try:
conn_string = "host='localhost' user='postgres' password='mysecretpassword'"
conn = psycopg2.connect(conn_string)
conn.close()
print "Postgres Started"
return
except Exception as ex:
print "Can't connect to Postgres " + str(ex)
time.sleep(0.5)
raise Exception("Cannot wait Postgres container")
def wait_zookeeper_to_start(self, timeout=60):
start = time.time()
while time.time() - start < timeout:
try:
for instance in ['zoo1', 'zoo2', 'zoo3']:
conn = self.get_kazoo_client(instance)
conn.get_children('/')
print "All instances of ZooKeeper started"
return
except Exception as ex:
print "Can't connect to ZooKeeper " + str(ex)
time.sleep(0.5)
raise Exception("Cannot wait ZooKeeper container")
def wait_hdfs_to_start(self, timeout=60):
hdfs_api = HDFSApi("root")
start = time.time()
while time.time() - start < timeout:
try:
hdfs_api.write_data("/somefilewithrandomname222", "1")
print "Connected to HDFS and SafeMode disabled! "
return
except Exception as ex:
print "Can't connect to HDFS " + str(ex)
time.sleep(1)
raise Exception("Can't wait HDFS to start")
def wait_mongo_to_start(self, timeout=30):
connection_str = 'mongodb://{user}:{password}@{host}:{port}'.format(
host='localhost', port='27018', user='root', password='clickhouse')
connection = pymongo.MongoClient(connection_str)
start = time.time()
while time.time() - start < timeout:
try:
connection.database_names()
print "Connected to Mongo dbs:", connection.database_names()
return
except Exception as ex:
print "Can't connect to Mongo " + str(ex)
time.sleep(1)
def wait_minio_to_start(self, timeout=30):
minio_client = Minio('localhost:9001',
access_key='minio',
secret_key='minio123',
secure=False)
start = time.time()
while time.time() - start < timeout:
try:
minio_client.list_buckets()
logging.info("Connected to Minio.")
if minio_client.bucket_exists(self.minio_bucket):
minio_client.remove_bucket(self.minio_bucket)
minio_client.make_bucket(self.minio_bucket)
logging.info("S3 bucket '%s' created", self.minio_bucket)
self.minio_client = minio_client
return
except Exception as ex:
logging.warning("Can't connect to Minio: %s", str(ex))
time.sleep(1)
raise Exception("Can't wait Minio to start")
def wait_schema_registry_to_start(self, timeout=10):
sr_client = CachedSchemaRegistryClient('http://localhost:8081')
start = time.time()
while time.time() - start < timeout:
try:
sr_client._send_request(sr_client.url)
self.schema_registry_client = sr_client
logging.info("Connected to SchemaRegistry")
return
except Exception as ex:
logging.warning("Can't connect to SchemaRegistry: %s", str(ex))
time.sleep(1)
def wait_cassandra_to_start(self, timeout=30):
cass_client = cassandra.cluster.Cluster(["localhost"], port="9043")
start = time.time()
while time.time() - start < timeout:
try:
cass_client.connect()
logging.info("Connected to Cassandra")
return
except Exception as ex:
logging.warning("Can't connect to Cassandra: %s", str(ex))
time.sleep(1)
def start(self, destroy_dirs=True):
if self.is_up:
return
# Just in case kill unstopped containers from previous launch
try:
logging.info("Trying to kill unstopped containers...")
if not subprocess_call(['docker-compose', 'kill']):
subprocess_call(['docker-compose', 'down', '--volumes'])
logging.info("Unstopped containers killed")
except:
pass
try:
if destroy_dirs and p.exists(self.instances_dir):
logging.info("Removing instances dir %s", self.instances_dir)
shutil.rmtree(self.instances_dir)
for instance in self.instances.values():
instance.create_dir(destroy_dir=destroy_dirs)
self.docker_client = docker.from_env(version=self.docker_api_version)
common_opts = ['up', '-d', '--force-recreate']
if self.with_zookeeper and self.base_zookeeper_cmd:
env = os.environ.copy()
if not self.zookeeper_use_tmpfs:
env['ZK_FS'] = 'bind'
for i in range(1, 4):
zk_data_path = self.instances_dir + '/zkdata' + str(i)
zk_log_data_path = self.instances_dir + '/zklog' + str(i)
if not os.path.exists(zk_data_path):
os.mkdir(zk_data_path)
if not os.path.exists(zk_log_data_path):
os.mkdir(zk_log_data_path)
env['ZK_DATA' + str(i)] = zk_data_path
env['ZK_DATA_LOG' + str(i)] = zk_log_data_path
subprocess.check_call(self.base_zookeeper_cmd + common_opts, env=env)
for command in self.pre_zookeeper_commands:
self.run_kazoo_commands_with_retries(command, repeats=5)
self.wait_zookeeper_to_start(120)
if self.with_mysql and self.base_mysql_cmd:
subprocess_check_call(self.base_mysql_cmd + common_opts)
self.wait_mysql_to_start(120)
if self.with_postgres and self.base_postgres_cmd:
subprocess_check_call(self.base_postgres_cmd + common_opts)
self.wait_postgres_to_start(120)
if self.with_kafka and self.base_kafka_cmd:
subprocess_check_call(self.base_kafka_cmd + common_opts + ['--renew-anon-volumes'])
self.kafka_docker_id = self.get_instance_docker_id('kafka1')
self.wait_schema_registry_to_start(120)
if self.with_hdfs and self.base_hdfs_cmd:
subprocess_check_call(self.base_hdfs_cmd + common_opts)
self.wait_hdfs_to_start(120)
if self.with_mongo and self.base_mongo_cmd:
subprocess_check_call(self.base_mongo_cmd + common_opts)
self.wait_mongo_to_start(30)
if self.with_redis and self.base_redis_cmd:
subprocess_check_call(self.base_redis_cmd + ['up', '-d', '--force-recreate'])
time.sleep(10)
if self.with_minio and self.base_minio_cmd:
minio_start_cmd = self.base_minio_cmd + common_opts
logging.info("Trying to create Minio instance by command %s", ' '.join(map(str, minio_start_cmd)))
subprocess_check_call(minio_start_cmd)
logging.info("Trying to connect to Minio...")
self.wait_minio_to_start()
if self.with_cassandra and self.base_cassandra_cmd:
subprocess_check_call(self.base_cassandra_cmd + ['up', '-d', '--force-recreate'])
self.wait_cassandra_to_start()
clickhouse_start_cmd = self.base_cmd + ['up', '-d', '--no-recreate']
logging.info("Trying to create ClickHouse instance by command %s", ' '.join(map(str, clickhouse_start_cmd)))
subprocess_check_call(clickhouse_start_cmd)
logging.info("ClickHouse instance created")
start_deadline = time.time() + 20.0 # seconds
for instance in self.instances.itervalues():
instance.docker_client = self.docker_client
instance.ip_address = self.get_instance_ip(instance.name)
logging.info("Waiting for ClickHouse start...")
instance.wait_for_start(start_deadline)
logging.info("ClickHouse started")
instance.client = Client(instance.ip_address, command=self.client_bin_path)
self.is_up = True
except BaseException, e:
print "Failed to start cluster: "
print str(e)
raise
def shutdown(self, kill=True):
sanitizer_assert_instance = None
with open(self.docker_logs_path, "w+") as f:
subprocess.check_call(self.base_cmd + ['logs'], stdout=f)
f.seek(0)
for line in f:
if SANITIZER_SIGN in line:
sanitizer_assert_instance = line.split('|')[0].strip()
break
if kill:
subprocess_check_call(self.base_cmd + ['kill'])
subprocess_check_call(self.base_cmd + ['down', '--volumes', '--remove-orphans'])
self.is_up = False
self.docker_client = None
for instance in self.instances.values():
instance.docker_client = None
instance.ip_address = None
instance.client = None
if not self.zookeeper_use_tmpfs:
for i in range(1, 4):
zk_data_path = self.instances_dir + '/zkdata' + str(i)
zk_log_data_path = self.instances_dir + '/zklog' + str(i)
if os.path.exists(zk_data_path):
shutil.rmtree(zk_data_path)
if os.path.exists(zk_log_data_path):
shutil.rmtree(zk_log_data_path)
if sanitizer_assert_instance is not None:
raise Exception("Sanitizer assert found in {} for instance {}".format(self.docker_logs_path, sanitizer_assert_instance))
def pause_container(self, instance_name):
subprocess_check_call(self.base_cmd + ['pause', instance_name])
# subprocess_check_call(self.base_cmd + ['kill', '-s SIGSTOP', instance_name])
def unpause_container(self, instance_name):
subprocess_check_call(self.base_cmd + ['unpause', instance_name])
# subprocess_check_call(self.base_cmd + ['kill', '-s SIGCONT', instance_name])
def open_bash_shell(self, instance_name):
os.system(' '.join(self.base_cmd + ['exec', instance_name, '/bin/bash']))
def get_kazoo_client(self, zoo_instance_name):
zk = KazooClient(hosts=self.get_instance_ip(zoo_instance_name))
zk.start()
return zk
def run_kazoo_commands_with_retries(self, kazoo_callback, zoo_instance_name='zoo1', repeats=1, sleep_for=1):
for i in range(repeats - 1):
try:
kazoo_callback(self.get_kazoo_client(zoo_instance_name))
return
except KazooException as e:
print repr(e)
time.sleep(sleep_for)
kazoo_callback(self.get_kazoo_client(zoo_instance_name))
def add_zookeeper_startup_command(self, command):
self.pre_zookeeper_commands.append(command)
CLICKHOUSE_START_COMMAND = "clickhouse server --config-file=/etc/clickhouse-server/config.xml --log-file=/var/log/clickhouse-server/clickhouse-server.log --errorlog-file=/var/log/clickhouse-server/clickhouse-server.err.log"
CLICKHOUSE_STAY_ALIVE_COMMAND = 'bash -c "{} --daemon; tail -f /dev/null"'.format(CLICKHOUSE_START_COMMAND)
DOCKER_COMPOSE_TEMPLATE = '''
version: '2.3'
services:
{name}:
image: {image}
hostname: {hostname}
volumes:
- {configs_dir}:/etc/clickhouse-server/
- {db_dir}:/var/lib/clickhouse/
- {logs_dir}:/var/log/clickhouse-server/
{binary_volume}
{odbc_bridge_volume}
{odbc_ini_path}
entrypoint: {entrypoint_cmd}
tmpfs: {tmpfs}
cap_add:
- SYS_PTRACE
depends_on: {depends_on}
user: '{user}'
env_file:
- {env_file}
security_opt:
- label:disable
{networks}
{app_net}
{ipv4_address}
{ipv6_address}
{net_aliases}
{net_alias1}
'''
class ClickHouseInstance:
def __init__(
self, cluster, base_path, name, custom_config_dir, custom_main_configs, custom_user_configs, macros,
with_zookeeper, zookeeper_config_path, with_mysql, with_kafka, with_mongo, with_redis, with_minio, with_cassandra,
base_configs_dir, server_bin_path, odbc_bridge_bin_path,
clickhouse_path_dir, with_odbc_drivers, hostname=None, env_variables=None,
image="yandex/clickhouse-integration-test",
stay_alive=False, ipv4_address=None, ipv6_address=None, with_installed_binary=False, tmpfs=None):
self.name = name
self.base_cmd = cluster.base_cmd
self.docker_id = cluster.get_instance_docker_id(self.name)
self.cluster = cluster
self.hostname = hostname if hostname is not None else self.name
self.tmpfs = tmpfs or []
self.custom_config_dir = p.abspath(p.join(base_path, custom_config_dir)) if custom_config_dir else None
self.custom_main_config_paths = [p.abspath(p.join(base_path, c)) for c in custom_main_configs]
self.custom_user_config_paths = [p.abspath(p.join(base_path, c)) for c in custom_user_configs]
self.clickhouse_path_dir = p.abspath(p.join(base_path, clickhouse_path_dir)) if clickhouse_path_dir else None
self.macros = macros if macros is not None else {}
self.with_zookeeper = with_zookeeper
self.zookeeper_config_path = zookeeper_config_path
self.base_configs_dir = base_configs_dir
self.server_bin_path = server_bin_path
self.odbc_bridge_bin_path = odbc_bridge_bin_path
self.with_mysql = with_mysql
self.with_kafka = with_kafka
self.with_mongo = with_mongo
self.with_redis = with_redis
self.with_minio = with_minio
self.with_cassandra = with_cassandra
self.path = p.join(self.cluster.instances_dir, name)
self.docker_compose_path = p.join(self.path, 'docker_compose.yml')
self.env_variables = env_variables or {}
if with_odbc_drivers:
self.odbc_ini_path = os.path.dirname(self.docker_compose_path) + "/odbc.ini:/etc/odbc.ini"
self.with_mysql = True
else:
self.odbc_ini_path = ""
self.docker_client = None
self.ip_address = None
self.client = None
self.default_timeout = 20.0 # 20 sec
self.image = image
self.stay_alive = stay_alive
self.ipv4_address = ipv4_address
self.ipv6_address = ipv6_address
self.with_installed_binary = with_installed_binary
def is_built_with_thread_sanitizer(self):
build_opts = self.query("SELECT value FROM system.build_options WHERE name = 'CXX_FLAGS'")
return "-fsanitize=thread" in build_opts
# Connects to the instance via clickhouse-client, sends a query (1st argument) and returns the answer
def query(self, sql, stdin=None, timeout=None, settings=None, user=None, password=None, database=None, ignore_error=False):
return self.client.query(sql, stdin=stdin, timeout=timeout, settings=settings, user=user, password=password, database=database, ignore_error=ignore_error)
def query_with_retry(self, sql, stdin=None, timeout=None, settings=None, user=None, password=None, database=None, ignore_error=False,
retry_count=20, sleep_time=0.5, check_callback=lambda x: True):
result = None
for i in range(retry_count):
try:
result = self.query(sql, stdin=stdin, timeout=timeout, settings=settings, user=user, password=password, database=database, ignore_error=ignore_error)
if check_callback(result):
return result
time.sleep(sleep_time)
except Exception as ex:
print "Retry {} got exception {}".format(i + 1, ex)
time.sleep(sleep_time)
if result is not None:
return result
raise Exception("Can't execute query {}".format(sql))
# As query() but doesn't wait response and returns response handler
def get_query_request(self, *args, **kwargs):
return self.client.get_query_request(*args, **kwargs)
# Connects to the instance via clickhouse-client, sends a query (1st argument), expects an error and return its code
def query_and_get_error(self, sql, stdin=None, timeout=None, settings=None, user=None, password=None, database=None):
return self.client.query_and_get_error(sql, stdin=stdin, timeout=timeout, settings=settings, user=user, password=password, database=database)
# The same as query_and_get_error but ignores successful query.
def query_and_get_answer_with_error(self, sql, stdin=None, timeout=None, settings=None, user=None, password=None, database=None):
return self.client.query_and_get_answer_with_error(sql, stdin=stdin, timeout=timeout, settings=settings, user=user, password=password, database=database)
# Connects to the instance via HTTP interface, sends a query and returns the answer
def http_query(self, sql, data=None, params=None, user=None, password=None, expect_fail_and_get_error=False):
if params is None:
params = {}
else:
params = params.copy()
params["query"] = sql
auth = ""
if user and password:
auth = "{}:{}@".format(user, password)
elif user:
auth = "{}@".format(user)
url = "http://" + auth + self.ip_address + ":8123/?" + urllib.urlencode(params)
open_result = urllib.urlopen(url, data)
def http_code_and_message():
return str(open_result.getcode()) + " " + httplib.responses[open_result.getcode()] + ": " + open_result.read()
if expect_fail_and_get_error:
if open_result.getcode() == 200:
raise Exception("ClickHouse HTTP server is expected to fail, but succeeded: " + open_result.read())
return http_code_and_message()
else:
if open_result.getcode() != 200:
raise Exception("ClickHouse HTTP server returned " + http_code_and_message())
return open_result.read()
# Connects to the instance via HTTP interface, sends a query and returns the answer
def http_request(self, url, method='GET', params=None, data=None, headers=None):
url = "http://" + self.ip_address + ":8123/"+url
return requests.request(method=method, url=url, params=params, data=data, headers=headers)
# Connects to the instance via HTTP interface, sends a query, expects an error and return the error message
def http_query_and_get_error(self, sql, data=None, params=None, user=None, password=None):
return self.http_query(sql=sql, data=data, params=params, user=user, password=password, expect_fail_and_get_error=True)
def kill_clickhouse(self, stop_start_wait_sec=5):
pid = self.get_process_pid("clickhouse")
if not pid:
raise Exception("No clickhouse found")
self.exec_in_container(["bash", "-c", "kill -9 {}".format(pid)], user='root')
time.sleep(stop_start_wait_sec)
def restore_clickhouse(self, retries=100):
pid = self.get_process_pid("clickhouse")
if pid:
raise Exception("ClickHouse has already started")
self.exec_in_container(["bash", "-c", "{} --daemon".format(CLICKHOUSE_START_COMMAND)], user=str(os.getuid()))
from helpers.test_tools import assert_eq_with_retry
# wait start
assert_eq_with_retry(self, "select 1", "1", retry_count=retries)
def restart_clickhouse(self, stop_start_wait_sec=5, kill=False):
if not self.stay_alive:
raise Exception("clickhouse can be restarted only with stay_alive=True instance")
self.exec_in_container(["bash", "-c", "pkill {} clickhouse".format("-9" if kill else "")], user='root')
time.sleep(stop_start_wait_sec)
self.exec_in_container(["bash", "-c", "{} --daemon".format(CLICKHOUSE_START_COMMAND)], user=str(os.getuid()))
# wait start
from helpers.test_tools import assert_eq_with_retry
assert_eq_with_retry(self, "select 1", "1", retry_count=int(stop_start_wait_sec / 0.5), sleep_time=0.5)
def exec_in_container(self, cmd, detach=False, **kwargs):
container_id = self.get_docker_handle().id
return self.cluster.exec_in_container(container_id, cmd, detach, **kwargs)
def contains_in_log(self, substring):
result = self.exec_in_container(
["bash", "-c", 'grep "{}" /var/log/clickhouse-server/clickhouse-server.log || true'.format(substring)])
return len(result) > 0
def copy_file_to_container(self, local_path, dest_path):
container_id = self.get_docker_handle().id
return self.cluster.copy_file_to_container(container_id, local_path, dest_path)
def get_process_pid(self, process_name):
output = self.exec_in_container(["bash", "-c",
"ps ax | grep '{}' | grep -v 'grep' | grep -v 'bash -c' | awk '{{print $1}}'".format(
process_name)])
if output:
try:
pid = int(output.split('\n')[0].strip())
return pid
except:
return None
return None
def restart_with_latest_version(self, stop_start_wait_sec=10, callback_onstop=None, signal=15):
if not self.stay_alive:
raise Exception("Cannot restart not stay alive container")
self.exec_in_container(["bash", "-c", "pkill -{} clickhouse".format(signal)], user='root')
retries = int(stop_start_wait_sec / 0.5)
local_counter = 0
# wait stop
while local_counter < retries:
if not self.get_process_pid("clickhouse server"):
break
time.sleep(0.5)
local_counter += 1
# force kill if server hangs
if self.get_process_pid("clickhouse server"):
self.exec_in_container(["bash", "-c", "pkill -{} clickhouse".format(9)], user='root')
if callback_onstop:
callback_onstop(self)
self.exec_in_container(
["bash", "-c", "cp /usr/share/clickhouse_fresh /usr/bin/clickhouse && chmod 777 /usr/bin/clickhouse"],
user='root')
self.exec_in_container(["bash", "-c",
"cp /usr/share/clickhouse-odbc-bridge_fresh /usr/bin/clickhouse-odbc-bridge && chmod 777 /usr/bin/clickhouse"],
user='root')
self.exec_in_container(["bash", "-c", "{} --daemon".format(CLICKHOUSE_START_COMMAND)], user=str(os.getuid()))
from helpers.test_tools import assert_eq_with_retry
# wait start
assert_eq_with_retry(self, "select 1", "1", retry_count=retries)
def get_docker_handle(self):
return self.docker_client.containers.get(self.docker_id)
def stop(self):
self.get_docker_handle().stop()
def start(self):
self.get_docker_handle().start()
def wait_for_start(self, deadline=None, timeout=None):
start_time = time.time()
if timeout is not None:
deadline = start_time + timeout
while True:
handle = self.get_docker_handle()
status = handle.status
if status == 'exited':
raise Exception(
"Instance `{}' failed to start. Container status: {}, logs: {}".format(self.name, status,
handle.logs()))
current_time = time.time()
time_left = deadline - current_time
if deadline is not None and current_time >= deadline:
raise Exception("Timed out while waiting for instance `{}' with ip address {} to start. "
"Container status: {}".format(self.name, self.ip_address, status))
# Repeatedly poll the instance address until there is something that listens there.
# Usually it means that ClickHouse is ready to accept queries.
try:
sock = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
sock.settimeout(time_left)
sock.connect((self.ip_address, 9000))
return
except socket.timeout:
continue
except socket.error as e:
if e.errno == errno.ECONNREFUSED:
time.sleep(0.1)
else:
raise
finally:
sock.close()
@staticmethod
def dict_to_xml(dictionary):
xml_str = dicttoxml(dictionary, custom_root="yandex", attr_type=False)
return xml.dom.minidom.parseString(xml_str).toprettyxml()
@property
def odbc_drivers(self):
if self.odbc_ini_path:
return {
"SQLite3": {
"DSN": "sqlite3_odbc",
"Database": "/tmp/sqliteodbc",
"Driver": "/usr/lib/x86_64-linux-gnu/odbc/libsqlite3odbc.so",
"Setup": "/usr/lib/x86_64-linux-gnu/odbc/libsqlite3odbc.so",
},
"MySQL": {
"DSN": "mysql_odbc",
"Driver": "/usr/lib/x86_64-linux-gnu/odbc/libmyodbc.so",
"Database": "clickhouse",
"Uid": "root",
"Pwd": "clickhouse",
"Server": "mysql1",
},
"PostgreSQL": {
"DSN": "postgresql_odbc",
"Database": "postgres",
"UserName": "postgres",
"Password": "mysecretpassword",
"Port": "5432",
"Servername": "postgres1",
"Protocol": "9.3",
"ReadOnly": "No",
"RowVersioning": "No",
"ShowSystemTables": "No",
"Driver": "/usr/lib/x86_64-linux-gnu/odbc/psqlodbca.so",
"Setup": "/usr/lib/x86_64-linux-gnu/odbc/libodbcpsqlS.so",
"ConnSettings": "",
}
}
else:
return {}
def _create_odbc_config_file(self):
with open(self.odbc_ini_path.split(':')[0], 'w') as f:
for driver_setup in self.odbc_drivers.values():
f.write("[{}]\n".format(driver_setup["DSN"]))
for key, value in driver_setup.items():
if key != "DSN":
f.write(key + "=" + value + "\n")
def replace_config(self, path_to_config, replacement):
self.exec_in_container(["bash", "-c", "echo '{}' > {}".format(replacement, path_to_config)])
def create_dir(self, destroy_dir=True):
"""Create the instance directory and all the needed files there."""
if destroy_dir:
self.destroy_dir()
elif p.exists(self.path):
return
os.makedirs(self.path)
configs_dir = p.abspath(p.join(self.path, 'configs'))
os.mkdir(configs_dir)
shutil.copy(p.join(self.base_configs_dir, 'config.xml'), configs_dir)
shutil.copy(p.join(self.base_configs_dir, 'users.xml'), configs_dir)
# used by all utils with any config
conf_d_dir = p.abspath(p.join(configs_dir, 'conf.d'))
# used by server with main config.xml
self.config_d_dir = p.abspath(p.join(configs_dir, 'config.d'))
users_d_dir = p.abspath(p.join(configs_dir, 'users.d'))
os.mkdir(conf_d_dir)
os.mkdir(self.config_d_dir)
os.mkdir(users_d_dir)
# The file is named with 0_ prefix to be processed before other configuration overloads.
shutil.copy(p.join(HELPERS_DIR, '0_common_instance_config.xml'), self.config_d_dir)
shutil.copy(p.join(HELPERS_DIR, '0_common_instance_users.xml'), users_d_dir)
# Generate and write macros file
macros = self.macros.copy()
macros['instance'] = self.name
with open(p.join(self.config_d_dir, 'macros.xml'), 'w') as macros_config:
macros_config.write(self.dict_to_xml({"macros": macros}))
# Put ZooKeeper config
if self.with_zookeeper:
shutil.copy(self.zookeeper_config_path, conf_d_dir)
# Copy config dir
if self.custom_config_dir:
distutils.dir_util.copy_tree(self.custom_config_dir, configs_dir)
# Copy config.d configs
for path in self.custom_main_config_paths:
shutil.copy(path, self.config_d_dir)
# Copy users.d configs
for path in self.custom_user_config_paths:
shutil.copy(path, users_d_dir)
db_dir = p.abspath(p.join(self.path, 'database'))
os.mkdir(db_dir)
if self.clickhouse_path_dir is not None:
distutils.dir_util.copy_tree(self.clickhouse_path_dir, db_dir)
logs_dir = p.abspath(p.join(self.path, 'logs'))
os.mkdir(logs_dir)
depends_on = []
if self.with_mysql:
depends_on.append("mysql1")
if self.with_kafka:
depends_on.append("kafka1")
depends_on.append("schema-registry")
if self.with_zookeeper:
depends_on.append("zoo1")
depends_on.append("zoo2")
depends_on.append("zoo3")
if self.with_minio:
depends_on.append("minio1")
depends_on.append("redirect")
env_file = _create_env_file(os.path.dirname(self.docker_compose_path), self.env_variables)
odbc_ini_path = ""
if self.odbc_ini_path:
self._create_odbc_config_file()
odbc_ini_path = '- ' + self.odbc_ini_path
entrypoint_cmd = CLICKHOUSE_START_COMMAND
if self.stay_alive:
entrypoint_cmd = CLICKHOUSE_STAY_ALIVE_COMMAND
networks = app_net = ipv4_address = ipv6_address = net_aliases = net_alias1 = ""
if self.ipv4_address is not None or self.ipv6_address is not None or self.hostname != self.name:
networks = "networks:"
app_net = "default:"
if self.ipv4_address is not None:
ipv4_address = "ipv4_address: " + self.ipv4_address
if self.ipv6_address is not None:
ipv6_address = "ipv6_address: " + self.ipv6_address
if self.hostname != self.name:
net_aliases = "aliases:"
net_alias1 = "- " + self.hostname
if not self.with_installed_binary:
binary_volume = "- " + self.server_bin_path + ":/usr/bin/clickhouse"
odbc_bridge_volume = "- " + self.odbc_bridge_bin_path + ":/usr/bin/clickhouse-odbc-bridge"
else:
binary_volume = "- " + self.server_bin_path + ":/usr/share/clickhouse_fresh"
odbc_bridge_volume = "- " + self.odbc_bridge_bin_path + ":/usr/share/clickhouse-odbc-bridge_fresh"
with open(self.docker_compose_path, 'w') as docker_compose:
docker_compose.write(DOCKER_COMPOSE_TEMPLATE.format(
image=self.image,
name=self.name,
hostname=self.hostname,
binary_volume=binary_volume,
odbc_bridge_volume=odbc_bridge_volume,
configs_dir=configs_dir,
config_d_dir=self.config_d_dir,
db_dir=db_dir,
tmpfs=str(self.tmpfs),
logs_dir=logs_dir,
depends_on=str(depends_on),
user=os.getuid(),
env_file=env_file,
odbc_ini_path=odbc_ini_path,
entrypoint_cmd=entrypoint_cmd,
networks=networks,
app_net=app_net,
ipv4_address=ipv4_address,
ipv6_address=ipv6_address,
net_aliases = net_aliases,
net_alias1 = net_alias1,
))
def destroy_dir(self):
if p.exists(self.path):
shutil.rmtree(self.path)
class ClickHouseKiller(object):
def __init__(self, clickhouse_node):
self.clickhouse_node = clickhouse_node
def __enter__(self):
self.clickhouse_node.kill_clickhouse()
def __exit__(self, exc_type, exc_val, exc_tb):
self.clickhouse_node.restore_clickhouse()