ClickHouse/src/Storages/Distributed/DirectoryMonitor.cpp

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#include <QueryPipeline/RemoteInserter.h>
#include <Formats/NativeReader.h>
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#include <Processors/Sources/SourceWithProgress.h>
#include <Common/escapeForFileName.h>
#include <Common/CurrentMetrics.h>
#include <Common/StringUtils/StringUtils.h>
#include <Common/SipHash.h>
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#include <Common/quoteString.h>
#include <Common/hex.h>
#include <Common/ActionBlocker.h>
#include <Common/formatReadable.h>
#include <Common/Stopwatch.h>
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#include <base/StringRef.h>
#include <Interpreters/Context.h>
#include <Interpreters/Cluster.h>
#include <Storages/Distributed/DirectoryMonitor.h>
#include <Storages/Distributed/Defines.h>
#include <Storages/StorageDistributed.h>
#include <IO/ReadBufferFromFile.h>
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#include <IO/ReadBufferFromString.h>
#include <IO/WriteBufferFromFile.h>
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#include <Compression/CompressedReadBuffer.h>
#include <Compression/CheckingCompressedReadBuffer.h>
#include <IO/ConnectionTimeouts.h>
#include <IO/ConnectionTimeoutsContext.h>
#include <IO/Operators.h>
#include <Disks/IDisk.h>
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#include <boost/algorithm/string/find_iterator.hpp>
#include <boost/algorithm/string/finder.hpp>
#include <boost/range/adaptor/indexed.hpp>
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#include <filesystem>
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namespace CurrentMetrics
{
extern const Metric DistributedSend;
extern const Metric DistributedFilesToInsert;
extern const Metric BrokenDistributedFilesToInsert;
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}
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namespace fs = std::filesystem;
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namespace DB
{
namespace ErrorCodes
{
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extern const int CANNOT_READ_ALL_DATA;
extern const int UNKNOWN_CODEC;
extern const int CANNOT_DECOMPRESS;
extern const int CHECKSUM_DOESNT_MATCH;
extern const int TOO_LARGE_SIZE_COMPRESSED;
extern const int ATTEMPT_TO_READ_AFTER_EOF;
extern const int EMPTY_DATA_PASSED;
extern const int INCORRECT_FILE_NAME;
extern const int MEMORY_LIMIT_EXCEEDED;
extern const int DISTRIBUTED_BROKEN_BATCH_INFO;
extern const int DISTRIBUTED_BROKEN_BATCH_FILES;
extern const int TOO_MANY_PARTS;
extern const int TOO_MANY_BYTES;
extern const int TOO_MANY_ROWS_OR_BYTES;
extern const int TOO_MANY_PARTITIONS;
extern const int DISTRIBUTED_TOO_MANY_PENDING_BYTES;
extern const int ARGUMENT_OUT_OF_BOUND;
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}
namespace
{
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constexpr const std::chrono::minutes decrease_error_count_period{5};
template <typename PoolFactory>
ConnectionPoolPtrs createPoolsForAddresses(const std::string & name, PoolFactory && factory, const Cluster::ShardsInfo & shards_info, Poco::Logger * log)
{
ConnectionPoolPtrs pools;
auto make_connection = [&](const Cluster::Address & address)
{
try
{
pools.emplace_back(factory(address));
}
catch (const Exception & e)
{
if (e.code() == ErrorCodes::INCORRECT_FILE_NAME)
{
tryLogCurrentException(log);
return;
}
throw;
}
};
for (auto it = boost::make_split_iterator(name, boost::first_finder(",")); it != decltype(it){}; ++it)
{
const std::string & dirname = boost::copy_range<std::string>(*it);
Cluster::Address address = Cluster::Address::fromFullString(dirname);
if (address.shard_index && dirname.ends_with("_all_replicas"))
{
if (address.shard_index > shards_info.size())
{
LOG_ERROR(log, "No shard with shard_index={} ({})", address.shard_index, name);
continue;
}
const auto & shard_info = shards_info[address.shard_index - 1];
size_t replicas = shard_info.per_replica_pools.size();
for (size_t replica_index = 1; replica_index <= replicas; ++replica_index)
{
address.replica_index = replica_index;
make_connection(address);
}
}
else
make_connection(address);
}
return pools;
}
void assertChecksum(CityHash_v1_0_2::uint128 expected, CityHash_v1_0_2::uint128 calculated)
{
if (expected != calculated)
{
String message = "Checksum of extra info doesn't match: corrupted data."
" Reference: " + getHexUIntLowercase(expected.first) + getHexUIntLowercase(expected.second)
+ ". Actual: " + getHexUIntLowercase(calculated.first) + getHexUIntLowercase(calculated.second)
+ ".";
throw Exception(message, ErrorCodes::CHECKSUM_DOESNT_MATCH);
}
}
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struct DistributedHeader
{
Settings insert_settings;
std::string insert_query;
ClientInfo client_info;
/// .bin file cannot have zero rows/bytes.
size_t rows = 0;
size_t bytes = 0;
/// dumpStructure() of the header -- obsolete
std::string block_header_string;
Block block_header;
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};
DistributedHeader readDistributedHeader(ReadBufferFromFile & in, Poco::Logger * log)
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{
DistributedHeader distributed_header;
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UInt64 query_size;
readVarUInt(query_size, in);
if (query_size == DBMS_DISTRIBUTED_SIGNATURE_HEADER)
{
/// Read the header as a string.
String header_data;
readStringBinary(header_data, in);
/// Check the checksum of the header.
CityHash_v1_0_2::uint128 checksum;
readPODBinary(checksum, in);
assertChecksum(checksum, CityHash_v1_0_2::CityHash128(header_data.data(), header_data.size()));
/// Read the parts of the header.
ReadBufferFromString header_buf(header_data);
UInt64 initiator_revision;
readVarUInt(initiator_revision, header_buf);
if (DBMS_TCP_PROTOCOL_VERSION < initiator_revision)
{
LOG_WARNING(log, "ClickHouse shard version is older than ClickHouse initiator version. It may lack support for new features.");
}
readStringBinary(distributed_header.insert_query, header_buf);
distributed_header.insert_settings.read(header_buf);
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if (header_buf.hasPendingData())
distributed_header.client_info.read(header_buf, initiator_revision);
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if (header_buf.hasPendingData())
{
readVarUInt(distributed_header.rows, header_buf);
readVarUInt(distributed_header.bytes, header_buf);
readStringBinary(distributed_header.block_header_string, header_buf);
}
if (header_buf.hasPendingData())
{
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NativeReader header_block_in(header_buf, DBMS_TCP_PROTOCOL_VERSION);
distributed_header.block_header = header_block_in.read();
if (!distributed_header.block_header)
throw Exception(ErrorCodes::CANNOT_READ_ALL_DATA, "Cannot read header from the {} batch", in.getFileName());
}
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/// Add handling new data here, for example:
///
/// if (header_buf.hasPendingData())
/// readVarUInt(my_new_data, header_buf);
///
/// And note that it is safe, because we have checksum and size for header.
return distributed_header;
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}
if (query_size == DBMS_DISTRIBUTED_SIGNATURE_HEADER_OLD_FORMAT)
{
distributed_header.insert_settings.read(in, SettingsWriteFormat::BINARY);
readStringBinary(distributed_header.insert_query, in);
return distributed_header;
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}
distributed_header.insert_query.resize(query_size);
in.readStrict(distributed_header.insert_query.data(), query_size);
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return distributed_header;
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}
/// remote_error argument is used to decide whether some errors should be
/// ignored or not, in particular:
///
/// - ATTEMPT_TO_READ_AFTER_EOF should not be ignored
/// if we receive it from remote (receiver), since:
/// - the sender will got ATTEMPT_TO_READ_AFTER_EOF when the client just go away,
/// i.e. server had been restarted
/// - since #18853 the file will be checked on the sender locally, and
/// if there is something wrong with the file itself, we will receive
/// ATTEMPT_TO_READ_AFTER_EOF not from the remote at first
/// and mark batch as broken.
bool isFileBrokenErrorCode(int code, bool remote_error)
{
return code == ErrorCodes::CHECKSUM_DOESNT_MATCH
|| code == ErrorCodes::EMPTY_DATA_PASSED
|| code == ErrorCodes::TOO_LARGE_SIZE_COMPRESSED
|| code == ErrorCodes::CANNOT_READ_ALL_DATA
|| code == ErrorCodes::UNKNOWN_CODEC
|| code == ErrorCodes::CANNOT_DECOMPRESS
|| code == ErrorCodes::DISTRIBUTED_BROKEN_BATCH_INFO
|| code == ErrorCodes::DISTRIBUTED_BROKEN_BATCH_FILES
|| (!remote_error && code == ErrorCodes::ATTEMPT_TO_READ_AFTER_EOF);
}
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/// Can the batch be split and send files from batch one-by-one instead?
bool isSplittableErrorCode(int code, bool remote)
{
return code == ErrorCodes::MEMORY_LIMIT_EXCEEDED
/// FunctionRange::max_elements and similar
|| code == ErrorCodes::ARGUMENT_OUT_OF_BOUND
|| code == ErrorCodes::TOO_MANY_PARTS
|| code == ErrorCodes::TOO_MANY_BYTES
|| code == ErrorCodes::TOO_MANY_ROWS_OR_BYTES
|| code == ErrorCodes::TOO_MANY_PARTITIONS
|| code == ErrorCodes::DISTRIBUTED_TOO_MANY_PENDING_BYTES
|| code == ErrorCodes::DISTRIBUTED_BROKEN_BATCH_INFO
|| isFileBrokenErrorCode(code, remote)
;
}
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SyncGuardPtr getDirectorySyncGuard(bool dir_fsync, const DiskPtr & disk, const String & path)
{
if (dir_fsync)
return disk->getDirectorySyncGuard(path);
return nullptr;
}
void writeAndConvert(RemoteInserter & remote, ReadBufferFromFile & in)
{
CompressedReadBuffer decompressing_in(in);
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NativeReader block_in(decompressing_in, DBMS_TCP_PROTOCOL_VERSION);
while (Block block = block_in.read())
{
auto converting_dag = ActionsDAG::makeConvertingActions(
block.cloneEmpty().getColumnsWithTypeAndName(),
remote.getHeader().getColumnsWithTypeAndName(),
ActionsDAG::MatchColumnsMode::Name);
auto converting_actions = std::make_shared<ExpressionActions>(std::move(converting_dag));
converting_actions->execute(block);
remote.write(block);
}
}
void writeRemoteConvert(
const DistributedHeader & distributed_header,
RemoteInserter & remote,
bool compression_expected,
ReadBufferFromFile & in,
Poco::Logger * log)
{
if (!remote.getHeader())
{
CheckingCompressedReadBuffer checking_in(in);
remote.writePrepared(checking_in);
return;
}
/// This is old format, that does not have header for the block in the file header,
/// applying ConvertingBlockInputStream in this case is not a big overhead.
///
/// Anyway we can get header only from the first block, which contain all rows anyway.
if (!distributed_header.block_header)
{
LOG_TRACE(log, "Processing batch {} with old format (no header)", in.getFileName());
writeAndConvert(remote, in);
return;
}
if (!blocksHaveEqualStructure(distributed_header.block_header, remote.getHeader()))
{
LOG_WARNING(log,
"Structure does not match (remote: {}, local: {}), implicit conversion will be done",
remote.getHeader().dumpStructure(), distributed_header.block_header.dumpStructure());
writeAndConvert(remote, in);
return;
}
/// If connection does not use compression, we have to uncompress the data.
if (!compression_expected)
{
writeAndConvert(remote, in);
return;
}
/// Otherwise write data as it was already prepared (more efficient path).
CheckingCompressedReadBuffer checking_in(in);
remote.writePrepared(checking_in);
}
uint64_t doubleToUInt64(double d)
{
if (d >= std::numeric_limits<uint64_t>::max())
return std::numeric_limits<uint64_t>::max();
return static_cast<uint64_t>(d);
}
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}
StorageDistributedDirectoryMonitor::StorageDistributedDirectoryMonitor(
StorageDistributed & storage_,
const DiskPtr & disk_,
const std::string & relative_path_,
ConnectionPoolPtr pool_,
ActionBlocker & monitor_blocker_,
BackgroundSchedulePool & bg_pool)
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: storage(storage_)
, pool(std::move(pool_))
, disk(disk_)
, relative_path(relative_path_)
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, path(fs::path(disk->getPath()) / relative_path / "")
, should_batch_inserts(storage.getDistributedSettingsRef().monitor_batch_inserts)
, split_batch_on_failure(storage.getDistributedSettingsRef().monitor_split_batch_on_failure)
, dir_fsync(storage.getDistributedSettingsRef().fsync_directories)
, min_batched_block_size_rows(storage.getContext()->getSettingsRef().min_insert_block_size_rows)
, min_batched_block_size_bytes(storage.getContext()->getSettingsRef().min_insert_block_size_bytes)
, current_batch_file_path(path + "current_batch.txt")
, default_sleep_time(storage.getDistributedSettingsRef().monitor_sleep_time_ms.totalMilliseconds())
, sleep_time(default_sleep_time)
, max_sleep_time(storage.getDistributedSettingsRef().monitor_max_sleep_time_ms.totalMilliseconds())
, log(&Poco::Logger::get(getLoggerName()))
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, monitor_blocker(monitor_blocker_)
, metric_pending_files(CurrentMetrics::DistributedFilesToInsert, 0)
, metric_broken_files(CurrentMetrics::BrokenDistributedFilesToInsert, 0)
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{
task_handle = bg_pool.createTask(getLoggerName() + "/Bg", [this]{ run(); });
task_handle->activateAndSchedule();
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}
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StorageDistributedDirectoryMonitor::~StorageDistributedDirectoryMonitor()
{
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if (!quit)
{
quit = true;
task_handle->deactivate();
}
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}
void StorageDistributedDirectoryMonitor::flushAllData()
{
if (quit)
return;
std::lock_guard lock{mutex};
const auto & files = getFiles();
if (!files.empty())
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{
processFiles(files);
/// Update counters
getFiles();
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}
}
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void StorageDistributedDirectoryMonitor::shutdownAndDropAllData()
{
if (!quit)
{
quit = true;
task_handle->deactivate();
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}
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auto dir_sync_guard = getDirectorySyncGuard(dir_fsync, disk, relative_path);
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fs::remove_all(path);
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}
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void StorageDistributedDirectoryMonitor::run()
{
std::lock_guard lock{mutex};
bool do_sleep = false;
while (!quit)
{
do_sleep = true;
const auto & files = getFiles();
if (files.empty())
break;
if (!monitor_blocker.isCancelled())
{
try
{
do_sleep = !processFiles(files);
std::lock_guard status_lock(status_mutex);
status.last_exception = std::exception_ptr{};
}
catch (...)
{
std::lock_guard status_lock(status_mutex);
do_sleep = true;
++status.error_count;
UInt64 q = doubleToUInt64(std::exp2(status.error_count));
std::chrono::milliseconds new_sleep_time(default_sleep_time.count() * q);
if (new_sleep_time.count() < 0)
sleep_time = max_sleep_time;
else
sleep_time = std::min(new_sleep_time, max_sleep_time);
tryLogCurrentException(getLoggerName().data());
status.last_exception = std::current_exception();
}
}
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else
{
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LOG_DEBUG(log, "Skipping send data over distributed table.");
}
const auto now = std::chrono::system_clock::now();
if (now - last_decrease_time > decrease_error_count_period)
{
std::lock_guard status_lock(status_mutex);
status.error_count /= 2;
last_decrease_time = now;
}
if (do_sleep)
break;
}
/// Update counters
getFiles();
if (!quit && do_sleep)
task_handle->scheduleAfter(sleep_time.count());
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}
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ConnectionPoolPtr StorageDistributedDirectoryMonitor::createPool(const std::string & name, const StorageDistributed & storage)
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{
const auto pool_factory = [&storage, &name] (const Cluster::Address & address) -> ConnectionPoolPtr
{
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const auto & cluster = storage.getCluster();
const auto & shards_info = cluster->getShardsInfo();
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const auto & shards_addresses = cluster->getShardsAddresses();
/// check new format shard{shard_index}_replica{replica_index}
/// (shard_index and replica_index starts from 1)
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if (address.shard_index != 0)
{
if (!address.replica_index)
throw Exception(ErrorCodes::INCORRECT_FILE_NAME,
"Wrong replica_index={} ({})", address.replica_index, name);
if (address.shard_index > shards_info.size())
throw Exception(ErrorCodes::INCORRECT_FILE_NAME,
"No shard with shard_index={} ({})", address.shard_index, name);
const auto & shard_info = shards_info[address.shard_index - 1];
if (address.replica_index > shard_info.per_replica_pools.size())
throw Exception(ErrorCodes::INCORRECT_FILE_NAME,
"No shard with replica_index={} ({})", address.replica_index, name);
return shard_info.per_replica_pools[address.replica_index - 1];
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}
/// existing connections pool have a higher priority
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for (size_t shard_index = 0; shard_index < shards_info.size(); ++shard_index)
{
const Cluster::Addresses & replicas_addresses = shards_addresses[shard_index];
for (size_t replica_index = 0; replica_index < replicas_addresses.size(); ++replica_index)
{
const Cluster::Address & replica_address = replicas_addresses[replica_index];
if (address.user == replica_address.user &&
address.password == replica_address.password &&
address.host_name == replica_address.host_name &&
address.port == replica_address.port &&
address.default_database == replica_address.default_database &&
address.secure == replica_address.secure)
{
return shards_info[shard_index].per_replica_pools[replica_index];
}
}
}
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return std::make_shared<ConnectionPool>(
1, /* max_connections */
address.host_name,
address.port,
address.default_database,
address.user,
address.password,
address.cluster,
address.cluster_secret,
storage.getName() + '_' + address.user, /* client */
Protocol::Compression::Enable,
address.secure);
};
auto pools = createPoolsForAddresses(name, pool_factory, storage.getCluster()->getShardsInfo(), storage.log);
const auto settings = storage.getContext()->getSettings();
return pools.size() == 1 ? pools.front() : std::make_shared<ConnectionPoolWithFailover>(pools,
settings.load_balancing,
settings.distributed_replica_error_half_life.totalSeconds(),
settings.distributed_replica_error_cap);
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}
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std::map<UInt64, std::string> StorageDistributedDirectoryMonitor::getFiles()
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{
std::map<UInt64, std::string> files;
size_t new_bytes_count = 0;
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fs::directory_iterator end;
for (fs::directory_iterator it{path}; it != end; ++it)
{
const auto & file_path_str = it->path();
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if (!it->is_directory() && startsWith(fs::path(file_path_str).extension(), ".bin"))
{
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files[parse<UInt64>(fs::path(file_path_str).stem())] = file_path_str;
new_bytes_count += fs::file_size(fs::path(file_path_str));
}
}
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{
std::lock_guard status_lock(status_mutex);
if (status.files_count != files.size())
LOG_TRACE(log, "Files set to {} (was {})", files.size(), status.files_count);
if (status.bytes_count != new_bytes_count)
LOG_TRACE(log, "Bytes set to {} (was {})", new_bytes_count, status.bytes_count);
metric_pending_files.changeTo(files.size());
status.files_count = files.size();
status.bytes_count = new_bytes_count;
}
return files;
}
bool StorageDistributedDirectoryMonitor::processFiles(const std::map<UInt64, std::string> & files)
{
if (should_batch_inserts)
{
processFilesWithBatching(files);
}
else
{
for (const auto & file : files)
{
if (quit)
return true;
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processFile(file.second);
}
}
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return true;
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}
void StorageDistributedDirectoryMonitor::processFile(const std::string & file_path)
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{
Stopwatch watch;
auto timeouts = ConnectionTimeouts::getTCPTimeoutsWithFailover(storage.getContext()->getSettingsRef());
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try
{
CurrentMetrics::Increment metric_increment{CurrentMetrics::DistributedSend};
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ReadBufferFromFile in(file_path);
const auto & distributed_header = readDistributedHeader(in, log);
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LOG_DEBUG(log, "Started processing `{}` ({} rows, {} bytes)", file_path,
formatReadableQuantity(distributed_header.rows),
formatReadableSizeWithBinarySuffix(distributed_header.bytes));
auto connection = pool->get(timeouts, &distributed_header.insert_settings);
RemoteInserter remote{*connection, timeouts,
distributed_header.insert_query,
distributed_header.insert_settings,
distributed_header.client_info};
bool compression_expected = connection->getCompression() == Protocol::Compression::Enable;
writeRemoteConvert(distributed_header, remote, compression_expected, in, log);
remote.onFinish();
}
catch (Exception & e)
{
e.addMessage(fmt::format("While sending {}", file_path));
maybeMarkAsBroken(file_path, e);
throw;
}
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auto dir_sync_guard = getDirectorySyncGuard(dir_fsync, disk, relative_path);
markAsSend(file_path);
LOG_TRACE(log, "Finished processing `{}` (took {} ms)", file_path, watch.elapsedMilliseconds());
}
struct StorageDistributedDirectoryMonitor::BatchHeader
{
Settings settings;
String query;
ClientInfo client_info;
Block header;
BatchHeader(Settings settings_, String query_, ClientInfo client_info_, Block header_)
: settings(std::move(settings_))
, query(std::move(query_))
, client_info(std::move(client_info_))
, header(std::move(header_))
{
}
bool operator==(const BatchHeader & other) const
{
return std::tie(settings, query, client_info.query_kind) ==
std::tie(other.settings, other.query, other.client_info.query_kind) &&
blocksHaveEqualStructure(header, other.header);
}
struct Hash
{
size_t operator()(const BatchHeader & batch_header) const
{
SipHash hash_state;
hash_state.update(batch_header.query.data(), batch_header.query.size());
batch_header.header.updateHash(hash_state);
return hash_state.get64();
}
};
};
struct StorageDistributedDirectoryMonitor::Batch
{
std::vector<UInt64> file_indices;
size_t total_rows = 0;
size_t total_bytes = 0;
bool recovered = false;
StorageDistributedDirectoryMonitor & parent;
const std::map<UInt64, String> & file_index_to_path;
bool split_batch_on_failure = true;
bool fsync = false;
bool dir_fsync = false;
Batch(
StorageDistributedDirectoryMonitor & parent_,
const std::map<UInt64, String> & file_index_to_path_)
: parent(parent_)
, file_index_to_path(file_index_to_path_)
, split_batch_on_failure(parent.split_batch_on_failure)
, fsync(parent.storage.getDistributedSettingsRef().fsync_after_insert)
, dir_fsync(parent.dir_fsync)
{}
bool isEnoughSize() const
{
return (!parent.min_batched_block_size_rows && !parent.min_batched_block_size_bytes)
|| (parent.min_batched_block_size_rows && total_rows >= parent.min_batched_block_size_rows)
|| (parent.min_batched_block_size_bytes && total_bytes >= parent.min_batched_block_size_bytes);
}
void send()
{
if (file_indices.empty())
return;
CurrentMetrics::Increment metric_increment{CurrentMetrics::DistributedSend};
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Stopwatch watch;
LOG_DEBUG(parent.log, "Sending a batch of {} files ({} rows, {} bytes).", file_indices.size(),
formatReadableQuantity(total_rows),
formatReadableSizeWithBinarySuffix(total_bytes));
if (!recovered)
{
/// For deduplication in Replicated tables to work, in case of error
/// we must try to re-send exactly the same batches.
/// So we save contents of the current batch into the current_batch_file_path file
/// and truncate it afterwards if all went well.
Write current batch for distributed send atomically (using .tmp + rename) Otherwise the following can happen after reboot: 2019.11.01 11:46:12.217143 [ 187 ] {} <Error> dist.Distributed.DirectoryMonitor: Code: 27, e.displayText() = DB::Exception: Cannot parse input: expected \n before: S\'^A\0^]\0\0<BE>4^A\0r<87>\0\0<A2><D7>^D^Y\0<F2>{^E<CD>\0\0Hy\0\0<F2>^_^C\0^_&\0\0<FF><D3>\0\0 <8D><91>\0\0<C0>9\0\0<C0><B0>^A\0^G<AA>\0\0<B5><FE>^A\0<BF><A7>^A\0<9B><CB>^A\0I^R^A\0<B7><AB>^A\0<BC><8F>\0\0˲^B\0Zy\0\0<94><AA>\0\0<98> <8F>\0\0\f<A5>\0\0^QN\0\0<E3><C6>\0\0<B1>6^B\0ɳ\0\0W<99>\0\0<B9><A2>\0\0:<BB>\0\0)<B1>\0\0#<8B>\0\0aW\0\0<ED>#\0\0<F1>@\0\0ˀ^B\0<D7><FC>\0\0<DF>, Stack trace: 0. 0x559e27222e60 StackTrace::StackTrace() /usr/bin/clickhouse 1. 0x559e27222c45 DB::Exception::Exception(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int) /usr/bin/clickhouse 2. 0x559e26de4473 ? /usr/bin/clickhouse 3. 0x559e272494b5 DB::assertString(char const*, DB::ReadBuffer&) /usr/bin/clickhouse 4. 0x559e2a5dab45 DB::StorageDistributedDirectoryMonitor::processFilesWithBatching(std::map<unsigned long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > const&) /usr/bin/clickhouse 5. 0x559e2a5db5fa DB::StorageDistributedDirectoryMonitor::processFiles() /usr/bin/clickhouse 6. 0x559e2a5dba78 DB::StorageDistributedDirectoryMonitor::run() /usr/bin/clickhouse 7. 0x559e2a5ddbbc ThreadFromGlobalPool::ThreadFromGlobalPool<void (DB::StorageDistributedDirectoryMonitor::*)(), DB::StorageDistributedDirectoryMonitor*>(void (DB::StorageDistributedDirectoryMonitor::*&&)(), DB::StorageDistributedDirectoryMonitor*&&)::{lambda()#1}::operator()() const /usr/bin/clickhouse 8. 0x559e2726b07c ThreadPoolImpl<std::thread>::worker(std::_List_iterator<std::thread>) /usr/bin/clickhouse 9. 0x559e2bbc3640 ? /usr/bin/clickhouse 10. 0x7fbd62b3cfb7 start_thread /lib/x86_64-linux-gnu/libpthread-2.29.so 11. 0x7fbd62a692ef __clone /lib/x86_64-linux-gnu/libc-2.29.so (version 19.17.1.1) v2: remove fsync, to avoid possible stalls (https://github.com/ClickHouse/ClickHouse/pull/7600#discussion_r342010874)
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/// Temporary file is required for atomicity.
String tmp_file{parent.current_batch_file_path + ".tmp"};
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auto dir_sync_guard = getDirectorySyncGuard(dir_fsync, parent.disk, parent.relative_path);
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if (fs::exists(tmp_file))
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LOG_ERROR(parent.log, "Temporary file {} exists. Unclean shutdown?", backQuote(tmp_file));
Write current batch for distributed send atomically (using .tmp + rename) Otherwise the following can happen after reboot: 2019.11.01 11:46:12.217143 [ 187 ] {} <Error> dist.Distributed.DirectoryMonitor: Code: 27, e.displayText() = DB::Exception: Cannot parse input: expected \n before: S\'^A\0^]\0\0<BE>4^A\0r<87>\0\0<A2><D7>^D^Y\0<F2>{^E<CD>\0\0Hy\0\0<F2>^_^C\0^_&\0\0<FF><D3>\0\0 <8D><91>\0\0<C0>9\0\0<C0><B0>^A\0^G<AA>\0\0<B5><FE>^A\0<BF><A7>^A\0<9B><CB>^A\0I^R^A\0<B7><AB>^A\0<BC><8F>\0\0˲^B\0Zy\0\0<94><AA>\0\0<98> <8F>\0\0\f<A5>\0\0^QN\0\0<E3><C6>\0\0<B1>6^B\0ɳ\0\0W<99>\0\0<B9><A2>\0\0:<BB>\0\0)<B1>\0\0#<8B>\0\0aW\0\0<ED>#\0\0<F1>@\0\0ˀ^B\0<D7><FC>\0\0<DF>, Stack trace: 0. 0x559e27222e60 StackTrace::StackTrace() /usr/bin/clickhouse 1. 0x559e27222c45 DB::Exception::Exception(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int) /usr/bin/clickhouse 2. 0x559e26de4473 ? /usr/bin/clickhouse 3. 0x559e272494b5 DB::assertString(char const*, DB::ReadBuffer&) /usr/bin/clickhouse 4. 0x559e2a5dab45 DB::StorageDistributedDirectoryMonitor::processFilesWithBatching(std::map<unsigned long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > const&) /usr/bin/clickhouse 5. 0x559e2a5db5fa DB::StorageDistributedDirectoryMonitor::processFiles() /usr/bin/clickhouse 6. 0x559e2a5dba78 DB::StorageDistributedDirectoryMonitor::run() /usr/bin/clickhouse 7. 0x559e2a5ddbbc ThreadFromGlobalPool::ThreadFromGlobalPool<void (DB::StorageDistributedDirectoryMonitor::*)(), DB::StorageDistributedDirectoryMonitor*>(void (DB::StorageDistributedDirectoryMonitor::*&&)(), DB::StorageDistributedDirectoryMonitor*&&)::{lambda()#1}::operator()() const /usr/bin/clickhouse 8. 0x559e2726b07c ThreadPoolImpl<std::thread>::worker(std::_List_iterator<std::thread>) /usr/bin/clickhouse 9. 0x559e2bbc3640 ? /usr/bin/clickhouse 10. 0x7fbd62b3cfb7 start_thread /lib/x86_64-linux-gnu/libpthread-2.29.so 11. 0x7fbd62a692ef __clone /lib/x86_64-linux-gnu/libc-2.29.so (version 19.17.1.1) v2: remove fsync, to avoid possible stalls (https://github.com/ClickHouse/ClickHouse/pull/7600#discussion_r342010874)
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{
WriteBufferFromFile out{tmp_file, O_WRONLY | O_TRUNC | O_CREAT};
writeText(out);
out.finalize();
if (fsync)
out.sync();
Write current batch for distributed send atomically (using .tmp + rename) Otherwise the following can happen after reboot: 2019.11.01 11:46:12.217143 [ 187 ] {} <Error> dist.Distributed.DirectoryMonitor: Code: 27, e.displayText() = DB::Exception: Cannot parse input: expected \n before: S\'^A\0^]\0\0<BE>4^A\0r<87>\0\0<A2><D7>^D^Y\0<F2>{^E<CD>\0\0Hy\0\0<F2>^_^C\0^_&\0\0<FF><D3>\0\0 <8D><91>\0\0<C0>9\0\0<C0><B0>^A\0^G<AA>\0\0<B5><FE>^A\0<BF><A7>^A\0<9B><CB>^A\0I^R^A\0<B7><AB>^A\0<BC><8F>\0\0˲^B\0Zy\0\0<94><AA>\0\0<98> <8F>\0\0\f<A5>\0\0^QN\0\0<E3><C6>\0\0<B1>6^B\0ɳ\0\0W<99>\0\0<B9><A2>\0\0:<BB>\0\0)<B1>\0\0#<8B>\0\0aW\0\0<ED>#\0\0<F1>@\0\0ˀ^B\0<D7><FC>\0\0<DF>, Stack trace: 0. 0x559e27222e60 StackTrace::StackTrace() /usr/bin/clickhouse 1. 0x559e27222c45 DB::Exception::Exception(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int) /usr/bin/clickhouse 2. 0x559e26de4473 ? /usr/bin/clickhouse 3. 0x559e272494b5 DB::assertString(char const*, DB::ReadBuffer&) /usr/bin/clickhouse 4. 0x559e2a5dab45 DB::StorageDistributedDirectoryMonitor::processFilesWithBatching(std::map<unsigned long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > const&) /usr/bin/clickhouse 5. 0x559e2a5db5fa DB::StorageDistributedDirectoryMonitor::processFiles() /usr/bin/clickhouse 6. 0x559e2a5dba78 DB::StorageDistributedDirectoryMonitor::run() /usr/bin/clickhouse 7. 0x559e2a5ddbbc ThreadFromGlobalPool::ThreadFromGlobalPool<void (DB::StorageDistributedDirectoryMonitor::*)(), DB::StorageDistributedDirectoryMonitor*>(void (DB::StorageDistributedDirectoryMonitor::*&&)(), DB::StorageDistributedDirectoryMonitor*&&)::{lambda()#1}::operator()() const /usr/bin/clickhouse 8. 0x559e2726b07c ThreadPoolImpl<std::thread>::worker(std::_List_iterator<std::thread>) /usr/bin/clickhouse 9. 0x559e2bbc3640 ? /usr/bin/clickhouse 10. 0x7fbd62b3cfb7 start_thread /lib/x86_64-linux-gnu/libpthread-2.29.so 11. 0x7fbd62a692ef __clone /lib/x86_64-linux-gnu/libc-2.29.so (version 19.17.1.1) v2: remove fsync, to avoid possible stalls (https://github.com/ClickHouse/ClickHouse/pull/7600#discussion_r342010874)
2019-11-03 19:26:46 +00:00
}
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fs::rename(tmp_file, parent.current_batch_file_path);
}
auto timeouts = ConnectionTimeouts::getTCPTimeoutsWithFailover(parent.storage.getContext()->getSettingsRef());
auto connection = parent.pool->get(timeouts);
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bool batch_broken = false;
bool batch_marked_as_broken = false;
try
{
try
{
sendBatch(*connection, timeouts);
}
catch (const Exception & e)
{
if (split_batch_on_failure && isSplittableErrorCode(e.code(), e.isRemoteException()))
{
tryLogCurrentException(parent.log, "Trying to split batch due to");
sendSeparateFiles(*connection, timeouts);
}
else
throw;
}
}
catch (Exception & e)
{
if (isFileBrokenErrorCode(e.code(), e.isRemoteException()))
{
tryLogCurrentException(parent.log, "Failed to send batch due to");
batch_broken = true;
if (!e.isRemoteException() && e.code() == ErrorCodes::DISTRIBUTED_BROKEN_BATCH_FILES)
batch_marked_as_broken = true;
}
else
{
std::vector<std::string> files(file_index_to_path.size());
for (const auto && file_info : file_index_to_path | boost::adaptors::indexed())
files[file_info.index()] = file_info.value().second;
e.addMessage(fmt::format("While sending batch {}", fmt::join(files, "\n")));
throw;
}
}
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if (!batch_broken)
{
LOG_TRACE(parent.log, "Sent a batch of {} files (took {} ms).", file_indices.size(), watch.elapsedMilliseconds());
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auto dir_sync_guard = getDirectorySyncGuard(dir_fsync, parent.disk, parent.relative_path);
for (UInt64 file_index : file_indices)
parent.markAsSend(file_index_to_path.at(file_index));
}
else if (!batch_marked_as_broken)
{
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LOG_ERROR(parent.log, "Marking a batch of {} files as broken.", file_indices.size());
for (UInt64 file_idx : file_indices)
{
auto file_path = file_index_to_path.find(file_idx);
if (file_path != file_index_to_path.end())
parent.markAsBroken(file_path->second);
}
}
file_indices.clear();
total_rows = 0;
total_bytes = 0;
recovered = false;
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fs::resize_file(parent.current_batch_file_path, 0);
}
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void writeText(WriteBuffer & out)
{
for (UInt64 file_idx : file_indices)
out << file_idx << '\n';
}
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void readText(ReadBuffer & in)
{
while (!in.eof())
{
UInt64 idx;
in >> idx >> "\n";
file_indices.push_back(idx);
}
recovered = true;
}
private:
void sendBatch(Connection & connection, const ConnectionTimeouts & timeouts)
{
std::unique_ptr<RemoteInserter> remote;
for (UInt64 file_idx : file_indices)
{
auto file_path = file_index_to_path.find(file_idx);
if (file_path == file_index_to_path.end())
throw Exception(ErrorCodes::DISTRIBUTED_BROKEN_BATCH_INFO,
"Failed to send batch: file with index {} is absent", file_idx);
ReadBufferFromFile in(file_path->second);
const auto & distributed_header = readDistributedHeader(in, parent.log);
if (!remote)
{
remote = std::make_unique<RemoteInserter>(connection, timeouts,
distributed_header.insert_query,
distributed_header.insert_settings,
distributed_header.client_info);
}
bool compression_expected = connection.getCompression() == Protocol::Compression::Enable;
writeRemoteConvert(distributed_header, *remote, compression_expected, in, parent.log);
}
if (remote)
remote->onFinish();
}
void sendSeparateFiles(Connection & connection, const ConnectionTimeouts & timeouts)
{
size_t broken_files = 0;
for (UInt64 file_idx : file_indices)
{
auto file_path = file_index_to_path.find(file_idx);
if (file_path == file_index_to_path.end())
{
LOG_ERROR(parent.log, "Failed to send one file from batch: file with index {} is absent", file_idx);
++broken_files;
continue;
}
try
{
ReadBufferFromFile in(file_path->second);
const auto & distributed_header = readDistributedHeader(in, parent.log);
RemoteInserter remote(connection, timeouts,
distributed_header.insert_query,
distributed_header.insert_settings,
distributed_header.client_info);
bool compression_expected = connection.getCompression() == Protocol::Compression::Enable;
writeRemoteConvert(distributed_header, remote, compression_expected, in, parent.log);
remote.onFinish();
}
catch (Exception & e)
{
e.addMessage(fmt::format("While sending {}", file_path->second));
parent.maybeMarkAsBroken(file_path->second, e);
++broken_files;
}
}
if (broken_files)
throw Exception(ErrorCodes::DISTRIBUTED_BROKEN_BATCH_FILES,
"Failed to send {} files", broken_files);
}
};
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class DirectoryMonitorSource : public SourceWithProgress
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{
public:
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struct Data
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{
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std::unique_ptr<ReadBufferFromFile> in;
std::unique_ptr<CompressedReadBuffer> decompressing_in;
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std::unique_ptr<NativeReader> block_in;
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Poco::Logger * log = nullptr;
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Block first_block;
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explicit Data(const String & file_name)
{
in = std::make_unique<ReadBufferFromFile>(file_name);
decompressing_in = std::make_unique<CompressedReadBuffer>(*in);
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block_in = std::make_unique<NativeReader>(*decompressing_in, DBMS_TCP_PROTOCOL_VERSION);
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log = &Poco::Logger::get("DirectoryMonitorSource");
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readDistributedHeader(*in, log);
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first_block = block_in->read();
}
Data(Data &&) = default;
};
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explicit DirectoryMonitorSource(const String & file_name)
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: DirectoryMonitorSource(Data(file_name))
{
}
explicit DirectoryMonitorSource(Data data_)
: SourceWithProgress(data_.first_block.cloneEmpty())
, data(std::move(data_))
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{
}
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String getName() const override { return "DirectoryMonitorSource"; }
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protected:
Chunk generate() override
{
if (data.first_block)
{
size_t num_rows = data.first_block.rows();
Chunk res(data.first_block.getColumns(), num_rows);
data.first_block.clear();
return res;
}
auto block = data.block_in->read();
if (!block)
return {};
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size_t num_rows = block.rows();
return Chunk(block.getColumns(), num_rows);
}
private:
Data data;
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};
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std::shared_ptr<ISource> StorageDistributedDirectoryMonitor::createSourceFromFile(const String & file_name)
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{
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return std::make_shared<DirectoryMonitorSource>(file_name);
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}
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bool StorageDistributedDirectoryMonitor::addAndSchedule(size_t file_size, size_t ms)
{
if (quit)
return false;
{
std::lock_guard status_lock(status_mutex);
metric_pending_files.add();
status.bytes_count += file_size;
++status.files_count;
}
return task_handle->scheduleAfter(ms, false);
}
StorageDistributedDirectoryMonitor::Status StorageDistributedDirectoryMonitor::getStatus()
{
std::lock_guard status_lock(status_mutex);
Status current_status{status, path, monitor_blocker.isCancelled()};
return current_status;
}
void StorageDistributedDirectoryMonitor::processFilesWithBatching(const std::map<UInt64, std::string> & files)
{
std::unordered_set<UInt64> file_indices_to_skip;
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if (fs::exists(current_batch_file_path))
{
/// Possibly, we failed to send a batch on the previous iteration. Try to send exactly the same batch.
Batch batch(*this, files);
ReadBufferFromFile in{current_batch_file_path};
batch.readText(in);
file_indices_to_skip.insert(batch.file_indices.begin(), batch.file_indices.end());
batch.send();
}
std::unordered_map<BatchHeader, Batch, BatchHeader::Hash> header_to_batch;
for (const auto & file : files)
{
if (quit)
return;
UInt64 file_idx = file.first;
const String & file_path = file.second;
if (file_indices_to_skip.count(file_idx))
continue;
size_t total_rows = 0;
size_t total_bytes = 0;
Block header;
DistributedHeader distributed_header;
try
{
/// Determine metadata of the current file and check if it is not broken.
ReadBufferFromFile in{file_path};
distributed_header = readDistributedHeader(in, log);
if (distributed_header.rows)
{
total_rows += distributed_header.rows;
total_bytes += distributed_header.bytes;
}
if (distributed_header.block_header)
header = distributed_header.block_header;
if (!total_rows || !header)
{
LOG_DEBUG(log, "Processing batch {} with old format (no header/rows)", in.getFileName());
CompressedReadBuffer decompressing_in(in);
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NativeReader block_in(decompressing_in, DBMS_TCP_PROTOCOL_VERSION);
while (Block block = block_in.read())
{
total_rows += block.rows();
total_bytes += block.bytes();
if (!header)
header = block.cloneEmpty();
}
}
}
catch (const Exception & e)
{
if (maybeMarkAsBroken(file_path, e))
{
tryLogCurrentException(log, "File is marked broken due to");
continue;
}
else
throw;
}
BatchHeader batch_header(
std::move(distributed_header.insert_settings),
std::move(distributed_header.insert_query),
std::move(distributed_header.client_info),
std::move(header)
);
Batch & batch = header_to_batch.try_emplace(batch_header, *this, files).first->second;
batch.file_indices.push_back(file_idx);
batch.total_rows += total_rows;
batch.total_bytes += total_bytes;
if (batch.isEnoughSize())
{
batch.send();
}
}
for (auto & kv : header_to_batch)
{
Batch & batch = kv.second;
batch.send();
}
{
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auto dir_sync_guard = getDirectorySyncGuard(dir_fsync, disk, relative_path);
/// current_batch.txt will not exist if there was no send
/// (this is the case when all batches that was pending has been marked as pending)
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if (fs::exists(current_batch_file_path))
fs::remove(current_batch_file_path);
}
}
void StorageDistributedDirectoryMonitor::markAsBroken(const std::string & file_path)
{
const auto last_path_separator_pos = file_path.rfind('/');
const auto & base_path = file_path.substr(0, last_path_separator_pos + 1);
const auto & file_name = file_path.substr(last_path_separator_pos + 1);
const String & broken_path = fs::path(base_path) / "broken/";
const String & broken_file_path = fs::path(broken_path) / file_name;
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fs::create_directory(broken_path);
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auto dir_sync_guard = getDirectorySyncGuard(dir_fsync, disk, relative_path);
auto broken_dir_sync_guard = getDirectorySyncGuard(dir_fsync, disk, fs::path(relative_path) / "broken/");
{
std::lock_guard status_lock(status_mutex);
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size_t file_size = fs::file_size(file_path);
--status.files_count;
status.bytes_count -= file_size;
++status.broken_files_count;
status.broken_bytes_count += file_size;
metric_broken_files.add();
}
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fs::rename(file_path, broken_file_path);
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LOG_ERROR(log, "Renamed `{}` to `{}`", file_path, broken_file_path);
}
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void StorageDistributedDirectoryMonitor::markAsSend(const std::string & file_path)
{
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size_t file_size = fs::file_size(file_path);
{
std::lock_guard status_lock(status_mutex);
metric_pending_files.sub();
--status.files_count;
status.bytes_count -= file_size;
}
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fs::remove(file_path);
}
bool StorageDistributedDirectoryMonitor::maybeMarkAsBroken(const std::string & file_path, const Exception & e)
{
/// mark file as broken if necessary
if (isFileBrokenErrorCode(e.code(), e.isRemoteException()))
{
markAsBroken(file_path);
return true;
}
else
return false;
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}
std::string StorageDistributedDirectoryMonitor::getLoggerName() const
{
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return storage.getStorageID().getFullTableName() + ".DirectoryMonitor";
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}
void StorageDistributedDirectoryMonitor::updatePath(const std::string & new_relative_path)
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{
task_handle->deactivate();
std::lock_guard lock{mutex};
{
std::lock_guard status_lock(status_mutex);
relative_path = new_relative_path;
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path = fs::path(disk->getPath()) / relative_path / "";
}
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current_batch_file_path = path + "current_batch.txt";
task_handle->activateAndSchedule();
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}
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}